Table 4 Identities of variable region V6-V8 DGGE bands picked and sequenced from the gel in Figure 6A
DGGE band number | Closest relative (if known) | Origin and accession number | Sequence homology (%) |
|---|---|---|---|
1 | Akkermansia muciniphila | Adult human gut [GenBank:AY271254] | 97 |
2 | Uncultured human gut bacterial clone | Elderly human [GenBank:AY920038] | 100 |
3 | Uncultured human gut bacterium | Human gut [GenBank:EF402349] | 99 |
4 | Roseburia faecalis | Healthy adult faecal sample [GenBank:DQ144129] | 99 |
5 | Uncultured human gut bacterial clone | Human adult faecal sample [GenBank:DQ795140] | 98 |
6 | Uncultured bacterial clone | Rumen [GenBank:DQ394592] | 96 |
7 | Uncultured Clostridiales clone | Human gut [GenBank:EU530233] | 99 |
8 | Lachnobacterium bovis | Animal rumen [GenBank:AF298665] | 100 |
9 | Lachnospira pectinoschiza | Greenland ice core [GenBank:AY169414] | 98 |
10 | Butyrivibrio crossotus | No origin given [GenBank:X89981] | 98 |
11 | Uncultured bacterial clone | Human adult faecal sample [GenBank:AY916377] | 99 |
12 | Eubacterium rectale | Healthy human gut [GenBank:AY804151] | 99 |
13 | Uncultured bacterial clone | Porcine intestine [GenBank:AF371769] | 100 |
14 | Uncultured bacterial clone | Human Crohn's disease patient [GenBank:AF530350] | 99 |
15 | Bifidobacterium longum NCC2705 | Human intestinal tract [GenBank:AE014295] | 100 |
16 | Uncultured bacterial clone | Animal rumen [GenBank:DQ394592] | 97 |
17 | Uncultured bacterial clone | Human gut [GenBank:AF132248] | 94 |
18 | Eubacterium rectale | Healthy human gut [GenBank:AY804151] | 99 |
19 | Uncultured bacterial clone | Crohn's disease patient [GenBank:AF530350] | 97 |
20 | Uncultured bacterial clone | Elderly human [GenBank:AY920002] | 99 |