Table 2 Sequence parameters for 7 MLST housekeeping and aur genes.
Gene | Sequence length (bp) | No. of alleles | No. of polymorphic sites | Nucleotide diversity | Purifying selection (ds/dn) |
|---|---|---|---|---|---|
arcC | 456–457 | 14 | 15 | 0.0085 | 6.53 |
aroE | 456 | 17 | 32 | 0.0146 | 7.91 |
glpF | 465 | 15 | 18 | 0.0074 | 7.39 |
gmk | 429 | 12 | 12 | 0.0102 | 10.50 |
pta | 474 | 17 | 19 | 0.0079 | 6.41 |
tpi | 402 | 19 | 27 | 0.0123 | 6.34 |
yqiL | 516 | 20 | 32 | 0.0109 | 7.44 |
aur-full length | 1530 | 24 | 195 | 0.0554 | 17.56 |
aur-mature | 906 | 20 | 99 | 0.0459 | 27.05 |
aur-profragment | 543 | 17 | 86 | 0.0711 | 14.88 |
aur-prefragment | 81 | 5 | 10 | 0.0556 | 5.49 |