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Table 2 Summary of consistent amino acid change among the five DENV-2 genotypes viruses.

From: Specific genetic markers for detecting subtypes of dengue virus serotype-2 in isolates from the states of Oaxaca and Veracruz, Mexico

PROTEIN

   

AMINO ACID POSITIONSa

C and PrM

   

101

104

106

108

112

129

130

142

143

145

153

PrM

        

14

15

28

29

31

39

STRAIN/YEAR

ACCESSION GENBANK No.

DIAGNOSIS

GENOTYPE

           

Tonga/74

AY744147

DF

AMERICAN

T

M

I

L

V

S

R

K

D

T

M

S1vaccine/USA/93

M19197

DF

AMERICAN

T

M

I

L

V

S

R

K

D

T

M

131/MEX/92

AF100469

DF

AMERICAN

T

M

I

L

V

S

R

K

D

T

M

I348600/COL/86

AY702040

DF

AMERICAN

T

M

I

L

V

S

R

K

D

T

M

P23085 INDI-60/01

DQ448238

DF

AMERICAN

T

M

I

L

V

S

R

K

D

T

M

Ven2/87

AF100465

DF

AMERICAN

T

M

I

L

V

S

R

K

D

T

L

HUAT2/MEX/01

AY692469

DF

ASIAN/AMERICAN

T

V

I

L

A

G

R

K

V

V

L

SALC9/MEX/01

AY692465

DF

ASIAN/AMERICAN

T

V

I

L

A

G

R

K

D

V

I

HUAT11/MEX/01

AY692470

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

K

D

V

I

HUAT12/MEX/01

AY692471

DF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

TUX19/MEX/01

AY692467

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

TON4/MEX/01

AY692468

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

JUCH5/MEX/01

AY692466

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

OAX/MEXS707/05*

EF595822

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

M

OAX/MEXS1038/05*

EF595828

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

OAXS1656/MEX/05*

EF595834

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

OAX/MEXS739/05*

EF595829

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

OAX/MEXS1733/06*

EF595821

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

OAX/MEXS14946/06*

EF595800

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

OAX/MEXS14760/06*

EF595824

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

OAX/MEXS1020/06*

EF595823

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

VER/MEXS013A/06*

EU552535

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

VER/MEXS011A/06*

EU552536

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

VER/MEXS008A/06*

EU552538

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

VER/MEXS015A/06*

EU552534

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

VER/MEXS033A/06*

EU552537

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

VER/MEXS020A/O6*

EU552539

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

Cuba13/97

AY702034

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

Cuba115/97

AY702036

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

Cuba205/97

AY702039

DSS

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

Cuba165/97

AY702038

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

Cuba58/97

AY702035

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

Cuba89/97

AY702037

DHF/DSS

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

MART/98-703/98

AF208496

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

DR23/01

AB122020

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

DR31/01

AB122021

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

DR59/01

AB122022

DHF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

LARD1701/Ven/01

AF360861

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

LARD1432/Ven/01

AF360860

DF

ASIAN/AMERICAN

T

V

V

L

A

G

R

E

D

V

I

LARD1910/Ven/01

AF360862

DF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

LARD1996/Ven/01

AF360863

DF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

Mara3/Ven/02

AY0444421

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

BR64022/02

AF489932

NA

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

Jamaica/1409/83

M20558

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

China 04

U87411

DHF

ASIAN/AMERICAN

T

V

I

L

A

G

R

E

D

V

I

CO390/Th/99

AF100462

DHF

ASIAN 1

S

V

I

L

V

S

R

E

D

V

M

Bangkok 1974

AJ487271

NA

ASIAN 1

S

M

I

L

V

S

R

E

D

V

M

16681/USA/97

U87411

NA

ASIAN 1

S

M

I

L

V

S

R

E

V

V

M

PDK53/USA/97

U87412

NA

ASIAN 1

S

M

I

L

V

S

R

E

V

V

M

16681-PDK53/97

U87411

DHF

ASIAN 1

S

M

I

L

V

S

R

E

D

V

M

ThNH-p11/93

AF022437

DF

ASIAN 1

S

M

I

L

V

S

R

E

D

V

M

ThNH-p12/93

AF022438

DF

ASIAN 1

S

M

I

L

V

S

R

E

D

V

M

ThNH-p14/93

AF022439

DHF

ASIAN 1

S

M

I

L

V

S

R

E

D

V

M

ThNH-7/93

AF022434

DSS

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH-28/93

AF022435

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH-52/93

AF022436

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH-p16/93

AF022440

DF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH-p36/93

AF022441

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH29/93

AF169678

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH36/93

AF169679

DF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH45/93

AF169680

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH55/93

AF169681

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH54/93

AF169682

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH62/93

AF169683

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH63/93

AF169684

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH69/93

AF169685

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH73/93

AF169686

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH76/93

AF169687

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

ThNH81/93

AF169688

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

Mara 4/Ven/90&

AF100466

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

K0008/Th/99

AF100459

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

K0010/Th/99

AF100460

DF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

C0371/Th/99

AF100461

DF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

C0166/Th/99

AF100463

DF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

C0167/Th/99

AF100464

DHF

ASIAN 1

S

M

I

L

V

S

I

E

D

V

M

New Guinea C/44

D00346

DHF

ASIAN 2

T

M

I

L

V

S

R

E

D

V

M

43/China/89

AF204178

DF

ASIAN 2

T

M

I

L

V

S

R

G

D

V

M

44/China/87

AF204177

DF

ASIAN 2

T

M

I

L

V

S

R

G

D

V

M

BA05i/Indon/05

AY858035

DF

COSMOPOLITAN

T

I

I

M

V

S

R

E

N

V

M

TSV01/Austra/93

AY037116

NA

COSMOPOLITAN

T

I

I

M

V

S

R

E

N

V

M

98900666/Indo/04

AB189124

DSS

COSMOPOLITAN

T

V

I

M

V

S

R

E

N

V

M

ZS01/China/01

EF051521

NA

COSMOPOLITAN

T

V

I

M

V

S

R

E

N

V

M

GWL18/INDI/01

DQ448231

NA

COSMOPOLITAN

T

V

I

L

A

S

R

E

D

V

M

GWL39/INDI/01

DQ448232

NA

COSMOPOLITAN

T

V

I

L

A

S

R

E

D

V

M

  1. aAmino acid sequence was numbered starting from protein C or prM to the end of the last codon sequenced. *Sequences of this study.
  2. &Recombinant strain [16].
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BMC Microbiology

ISSN: 1471-2180

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