Table 2 Classification of the 97 strains analyzed in M. tuberculosis complex species and genotypes
From: High genetic diversity among Mycobacterium tuberculosis complex strains from Sierra Leone
Classification | No. (% of all) | pks 1/15 (%) | No. MDR (%)1 |
|---|---|---|---|
M. tuberculosis | |||
Total | 74 (76.3) | 10 (13.5) | |
Beijing | 4 (4.1) | WT (100) | 3 (75%) |
Cameroon | 4 (4.1) | 7 bp deletion (100) | 0 |
East African Indian | 4 (4.1) | WT (100) | 0 |
Haarlem | 14 (14.4) | 7 bp deletion (100) | 4 (28.6%) |
LAM | 15 (15.5) | 7 bp deletion (100) | 1 (6.7) |
Sierra Leone-1 | 7 (7.2) | 7 bp deletion (100) | 0 |
Sierra Leone-2 | 10 (10.3) | 7 bp deletion (100) | 0 |
S-type | 4 (4.1) | 7 bp deletion (100) | 2 (50%) |
X-type | 1 (1.0) | 7 bp deletion (100) | 0 |
No classification | 11 (11.3) | 7 bp deletion (100) | |
M. africanum | |||
Total | 23 (23.7) | 1 (4.3) | |
West African-1 | 6 (6.2) | WT | 0 |
West African-2 | 17 (17.5) | 6 bp deletion (100) | 1 (5.9) |
Total | 97 (100) | 11 (11.3) |