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Table 2 Classification of the 97 strains analyzed in M. tuberculosis complex species and genotypes

From: High genetic diversity among Mycobacterium tuberculosis complex strains from Sierra Leone

Classification No. (% of all) pks 1/15 (%) No. MDR (%)1
M. tuberculosis    
   Total 74 (76.3)   10 (13.5)
   Beijing 4 (4.1) WT (100) 3 (75%)
   Cameroon 4 (4.1) 7 bp deletion (100) 0
   East African Indian 4 (4.1) WT (100) 0
   Haarlem 14 (14.4) 7 bp deletion (100) 4 (28.6%)
   LAM 15 (15.5) 7 bp deletion (100) 1 (6.7)
   Sierra Leone-1 7 (7.2) 7 bp deletion (100) 0
   Sierra Leone-2 10 (10.3) 7 bp deletion (100) 0
   S-type 4 (4.1) 7 bp deletion (100) 2 (50%)
   X-type 1 (1.0) 7 bp deletion (100) 0
   No classification 11 (11.3) 7 bp deletion (100)  
M. africanum    
   Total 23 (23.7)   1 (4.3)
   West African-1 6 (6.2) WT 0
   West African-2 17 (17.5) 6 bp deletion (100) 1 (5.9)
Total 97 (100)   11 (11.3)
  1. 1% of strains of the respective genotype
  2. Abbreviations: WT, wild type; bp, base pair.