Table 6 Properties of the NgoΦ4 CDS' sequences
NgoΦ4 CDSs | Genome position | Length (aa) | Putative function | Significant matches to proteins in GeneBank (Scores represent filtered BLASTP % identities over stated number of amino acid) |
|---|---|---|---|---|
NGO1000 | 982212–984008 | 75 | RecB family exonuclease | |
NGO1001 | 973188–973673 | 161 | RecB family exonuclease | |
NGO1002 | 973680–974048 | 122 | transcriptional factor | [Exiguobacterium sp. 255-15] antiterminator 27,53% on 77 (traA) [Lactococcus lactis] 20,46% on 100 |
NGO1003 | 977880–978314 | 184 | hypothetical protein | BH0339 [Bacillus halodurans C-125] (pfam DUF694 family) 36,55% on 180 |
NGO1004 | 978515–978889 | 119 | NS | |
NGO1005 | 978886–979764 | 288 | NS | |
NGO1006 | 980160–980540 | 116 | possible transposase | [NMA1601b][Neisseria meningitidis Z2491 79,83% on 43 |
NGO1007 | 980749–981042 | 69 | hypothetical protein | VT2-Sap81 [Bacteriophage VT2-Sa] (pfam zf-dskA-traR family) 42,55%on69, phi4795p07 [Phage phi4795]40,53% on 69 |
NGO1008 | 981023–981313 | 96 | Neisseria-specific protein | NMB1087 [Neisseria meningitidis MC58] 44,56% on 67 |
NGO1009 | 974075–974617 | 95 | Neisseria-specific protein | NMB1014 [Neisseria meningitidis MC58] 93,94% on 75 |
NGO1010 | 975275–976141 | 144 | conserved hypothetical protein | Pseudomonas aeruginosa 32,51% on 137 |
NGO1011 | 976191–976541 | 124 | NS | |
NGO1012 | 976976–977185 | 292 | NS | |
NGO1013 | 977473–977760 | 126 | transcriptional regulator | [NMB1007] [Neisseria meningitidis pfam HTH 3 family phage repressor MC58] 60,72% on 126 |
NGO1014 | 972837–973064 | 97 | hypothetical protein | NMB1005 [Neisseria meningitidis MC58] 79,84% on 73 B3CDS17 [Bacteriophage B3] 46,59% on 47 |
NGO1015 | 974783–975142 | 96 | Neisseria-specific protein | NMB1003 [Neisseria meningitidis MC58] 77,90% on 95 hypothetical protein B3CDS14 [Bacteriophage B3]32,61% on 90 |
NGO1020 | 977178–977468 | 598 | putative transposase | [Bacteriophage B3] 43,61% on 585 (pfam rve family) integrase protein [Salmonella typhimurium LT2] 25,41% on 383 |