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Table 6 Properties of the NgoΦ4 CDS' sequences

From: Characterization of the dsDNA prophage sequences in the genome of Neisseria gonorrhoeae and visualization of productive bacteriophage

NgoΦ4 CDSs Genome position Length (aa) Putative function Significant matches to proteins in GeneBank (Scores represent filtered BLASTP % identities over stated number of amino acid)
NGO1000 982212–984008 75 RecB family exonuclease  
NGO1001 973188–973673 161 RecB family exonuclease  
NGO1002 973680–974048 122 transcriptional factor [Exiguobacterium sp. 255-15] antiterminator 27,53% on 77 (traA) [Lactococcus lactis] 20,46% on 100
NGO1003 977880–978314 184 hypothetical protein BH0339 [Bacillus halodurans C-125] (pfam DUF694 family) 36,55% on 180
NGO1004 978515–978889 119 NS  
NGO1005 978886–979764 288 NS  
NGO1006 980160–980540 116 possible transposase [NMA1601b][Neisseria meningitidis Z2491 79,83% on 43
NGO1007 980749–981042 69 hypothetical protein VT2-Sap81 [Bacteriophage VT2-Sa] (pfam zf-dskA-traR family) 42,55%on69, phi4795p07 [Phage phi4795]40,53% on 69
NGO1008 981023–981313 96 Neisseria-specific protein NMB1087 [Neisseria meningitidis MC58] 44,56% on 67
NGO1009 974075–974617 95 Neisseria-specific protein NMB1014 [Neisseria meningitidis MC58] 93,94% on 75
NGO1010 975275–976141 144 conserved hypothetical protein Pseudomonas aeruginosa 32,51% on 137
NGO1011 976191–976541 124 NS  
NGO1012 976976–977185 292 NS  
NGO1013 977473–977760 126 transcriptional regulator [NMB1007] [Neisseria meningitidis pfam HTH 3 family phage repressor MC58] 60,72% on 126
NGO1014 972837–973064 97 hypothetical protein NMB1005 [Neisseria meningitidis MC58] 79,84% on 73 B3CDS17 [Bacteriophage B3] 46,59% on 47
NGO1015 974783–975142 96 Neisseria-specific protein NMB1003 [Neisseria meningitidis MC58] 77,90% on 95 hypothetical protein B3CDS14 [Bacteriophage B3]32,61% on 90
NGO1020 977178–977468 598 putative transposase [Bacteriophage B3] 43,61% on 585 (pfam rve family) integrase protein [Salmonella typhimurium LT2] 25,41% on 383