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Table 3 Annotation of proviral locus 1

From: Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus

Gene identifier Region Size Introns Sigs Product Family dN/dS
GIP_L1_00010 I 500 4   FL(2)D protein   
GIP_L1_00020 I 369 2   Trans-2-enoyl-CoA reductase   
GIP_L1_00030 I 240 2   oxidored-nitro domain-like protein   
GIP_L1_00040 I 562 3   hypothetical protein   
GIP_L1_00050 II 599 4 s 5' nucleotidase   
GIP_L1_00060 1p 165 1 s, t hypothetical protein 3 *
GIP_L1_00070 1p 98 1   lectin-like protein   *
GIP_L1_00080 1p 210 1 s, t conserved hypothetical protein 3 0.29
GIP_L1_00090 1p 266 1 s, t conserved hypothetical protein   0.51
GIP_L1_00100 1p 304 1 s CrV1-like protein 5 0.77
GIP_L1_00110 1p 161 1 s Lectin C-type domain   0.54
GIP_L1_00120 1p 138 1   conserved hypothetical protein 3 0.81
GIP_L1_00130 1p 133 0 s Cystatin domain   0.38
GIP_L1_00140 1p 341 1 s CrV1-like protein 5 0.51
GIP_L1_00150 1p 195 1 s hypothetical protein 5 1.04
GIP_L1_00160 1p 104 1   hypothetical protein   *
GIP_L1_00170 1p 219 1 s, g conserved hypothetical protein 7 *
GIP_L1_00180 1p 78 0 s hypothetical protein   *
GIP_L1_00190 1p 198 1   hypothetical protein 10 *
GIP_L1_00200 2p 143 1 s conserved hypothetical protein 1 u
GIP_L1_00210 2p 494 2 s P494 protein 8 *
GIP_L1_00220 2p 97 1 s hypothetical protein 9 *
GIP_L1_00230 2p 147 1 s conserved hypothetical protein 1 *
GIP_L1_00240 2p 582 2 s P494 protein 8 *
GIP_L1_00250 2p 88 1   hypothetical protein 9 *
GIP_L1_00260 2p 147 1 s conserved hypothetical protein 1 *
GIP_L1_00270 2p 253 1 s conserved hypothetical protein   *
GIP_L1_00280 3p 320 1 s conserved hypothetical protein   *
GIP_L1_00290 3p 354 1 s conserved hypothetical protein 12 0.09
GIP_L1_00300 3p 340 1 s, g P325 protein 1 0.56
GIP_L1_00310 3p 226 1 s conserved hypothetical protein 7 0.56
GIP_L1_00320 3p 241 1 s, g hypothetical protein   0.29
GIP_L1_00330 3p 444 1 s hypothetical protein 10 2.12
GIP_L1_00340 4p 337 1 s, g P325 protein 1 0.37
GIP_L1_00350 4p 106 1 s conserved hypothetical protein 2 *
GIP_L1_00360 4p 597 2 s Ribonuclease T2 domain 11 1.96
GIP_L1_00370 4p 898 2   conserved hypothetical protein 4 0.64
GIP_L1_00380 5p 166 1 s, t hypothetical protein 3 *
GIP_L1_00390 5p 171 1 s hypothetical protein   0.4
GIP_L1_00400 5p 430 1 s, g conserved hypothetical protein   0.55
GIP_L1_00410 5p 247 1 s conserved hypothetical protein   0.06
GIP_L1_00420 5p 215 1 s conserved hypothetical protein 7 0.31
GIP_L1_00430 5p 108 1 s, t hypothetical protein   *
GIP_L1_00440 5p 767 1 s lipoprotein-like protein 14 0.5
GIP_L1_00450 5p 581 0 s conserved hypothetical protein 14 0.53
GIP_L1_00460 5p 348 1 s conserved hypothetical protein 12 0.55
GIP_L1_00470 5p 304 1 s P325 protein 1 2.21
GIP_L1_00480 5p 170 1 s conserved hypothetical protein   *
GIP_L1_00490 6p 279 1 g P325-like protein 1 0.35
GIP_L1_00500 6p 109 1 s conserved hypothetical protein 2 0.18
GIP_L1_00510 6p 140 1 s conserved hypothetical protein 2 *
GIP_L1_00520 6p 100 1 s conserved hypothetical protein 2 0.57
GIP_L1_00530 6p 101 1 s conserved hypothetical protein 2 0.21
GIP_L1_00540 6p 106 1 s conserved hypothetical protein 2 *
GIP_L1_00550 6p 293 1   Ribonuclease T2 domain 11 0.51
GIP_L1_00560 6p 118 1   hypothetical protein   *
GIP_L1_00570 6p 896 2   conserved hypothetical protein 4 0.54
GIP_L1_00580 7p 1066 2   conserved hypothetical protein 4 0.57
GIP_L1_00590 7p 478 2 s conserved hypothetical protein 6 0.75
GIP_L1_00600 7p 119 1 s conserved hypothetical protein 13 *
GIP_L1_00610 7p 109 1 s conserved hypothetical protein 6 0.59
GIP_L1_00620 7p 218 1   conserved hypothetical protein   0.74
GIP_L1_00630 7p 496 1 s conserved hypothetical protein 13 0.58
GIP_L1_00640 7p 127 2 s conserved hypothetical protein 6 0.57
GIP_L1_00650 8p 253 1 s, t EP1-like protein   6.01
GIP_L1_00660 8p 177 1 s, g conserved hypothetical protein   0.92
GIP_L1_00670 8p 1132 1 s dentin-like protein   0.72
GIP_L1_00680 III 599 1 s hypothetical protein   
GIP_L1_00690 III 130 1   hypothetical protein   
GIP_L1_00700 IV 480 6   N-myristoyltransferase   
GIP_L1_00710 IV 326 3   Hyaluronidase   
  1. Gene identifier indicates the Genbank locus tag for each predicted gene. Region is the location of genes according to the delineations in Table 2. Sizes of the genes are given in amino acids. Signatures (Sigs) include "s" signal peptide, "t" trans-membrane domain, and "g" potential glycosylphosphatidylinisotol anchor. Family indicates the gene family to which the predicted gene belongs, if any. dN/dS ratios are given when applicable, and an "*" represents insufficient data to calculate a ratio, while a "u" represents a mathematically undefined ratio.