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Table 3 Annotation of proviral locus 1

From: Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus

Gene identifier

Region

Size

Introns

Sigs

Product

Family

dN/dS

GIP_L1_00010

I

500

4

 

FL(2)D protein

  

GIP_L1_00020

I

369

2

 

Trans-2-enoyl-CoA reductase

  

GIP_L1_00030

I

240

2

 

oxidored-nitro domain-like protein

  

GIP_L1_00040

I

562

3

 

hypothetical protein

  

GIP_L1_00050

II

599

4

s

5' nucleotidase

  

GIP_L1_00060

1p

165

1

s, t

hypothetical protein

3

*

GIP_L1_00070

1p

98

1

 

lectin-like protein

 

*

GIP_L1_00080

1p

210

1

s, t

conserved hypothetical protein

3

0.29

GIP_L1_00090

1p

266

1

s, t

conserved hypothetical protein

 

0.51

GIP_L1_00100

1p

304

1

s

CrV1-like protein

5

0.77

GIP_L1_00110

1p

161

1

s

Lectin C-type domain

 

0.54

GIP_L1_00120

1p

138

1

 

conserved hypothetical protein

3

0.81

GIP_L1_00130

1p

133

0

s

Cystatin domain

 

0.38

GIP_L1_00140

1p

341

1

s

CrV1-like protein

5

0.51

GIP_L1_00150

1p

195

1

s

hypothetical protein

5

1.04

GIP_L1_00160

1p

104

1

 

hypothetical protein

 

*

GIP_L1_00170

1p

219

1

s, g

conserved hypothetical protein

7

*

GIP_L1_00180

1p

78

0

s

hypothetical protein

 

*

GIP_L1_00190

1p

198

1

 

hypothetical protein

10

*

GIP_L1_00200

2p

143

1

s

conserved hypothetical protein

1

u

GIP_L1_00210

2p

494

2

s

P494 protein

8

*

GIP_L1_00220

2p

97

1

s

hypothetical protein

9

*

GIP_L1_00230

2p

147

1

s

conserved hypothetical protein

1

*

GIP_L1_00240

2p

582

2

s

P494 protein

8

*

GIP_L1_00250

2p

88

1

 

hypothetical protein

9

*

GIP_L1_00260

2p

147

1

s

conserved hypothetical protein

1

*

GIP_L1_00270

2p

253

1

s

conserved hypothetical protein

 

*

GIP_L1_00280

3p

320

1

s

conserved hypothetical protein

 

*

GIP_L1_00290

3p

354

1

s

conserved hypothetical protein

12

0.09

GIP_L1_00300

3p

340

1

s, g

P325 protein

1

0.56

GIP_L1_00310

3p

226

1

s

conserved hypothetical protein

7

0.56

GIP_L1_00320

3p

241

1

s, g

hypothetical protein

 

0.29

GIP_L1_00330

3p

444

1

s

hypothetical protein

10

2.12

GIP_L1_00340

4p

337

1

s, g

P325 protein

1

0.37

GIP_L1_00350

4p

106

1

s

conserved hypothetical protein

2

*

GIP_L1_00360

4p

597

2

s

Ribonuclease T2 domain

11

1.96

GIP_L1_00370

4p

898

2

 

conserved hypothetical protein

4

0.64

GIP_L1_00380

5p

166

1

s, t

hypothetical protein

3

*

GIP_L1_00390

5p

171

1

s

hypothetical protein

 

0.4

GIP_L1_00400

5p

430

1

s, g

conserved hypothetical protein

 

0.55

GIP_L1_00410

5p

247

1

s

conserved hypothetical protein

 

0.06

GIP_L1_00420

5p

215

1

s

conserved hypothetical protein

7

0.31

GIP_L1_00430

5p

108

1

s, t

hypothetical protein

 

*

GIP_L1_00440

5p

767

1

s

lipoprotein-like protein

14

0.5

GIP_L1_00450

5p

581

0

s

conserved hypothetical protein

14

0.53

GIP_L1_00460

5p

348

1

s

conserved hypothetical protein

12

0.55

GIP_L1_00470

5p

304

1

s

P325 protein

1

2.21

GIP_L1_00480

5p

170

1

s

conserved hypothetical protein

 

*

GIP_L1_00490

6p

279

1

g

P325-like protein

1

0.35

GIP_L1_00500

6p

109

1

s

conserved hypothetical protein

2

0.18

GIP_L1_00510

6p

140

1

s

conserved hypothetical protein

2

*

GIP_L1_00520

6p

100

1

s

conserved hypothetical protein

2

0.57

GIP_L1_00530

6p

101

1

s

conserved hypothetical protein

2

0.21

GIP_L1_00540

6p

106

1

s

conserved hypothetical protein

2

*

GIP_L1_00550

6p

293

1

 

Ribonuclease T2 domain

11

0.51

GIP_L1_00560

6p

118

1

 

hypothetical protein

 

*

GIP_L1_00570

6p

896

2

 

conserved hypothetical protein

4

0.54

GIP_L1_00580

7p

1066

2

 

conserved hypothetical protein

4

0.57

GIP_L1_00590

7p

478

2

s

conserved hypothetical protein

6

0.75

GIP_L1_00600

7p

119

1

s

conserved hypothetical protein

13

*

GIP_L1_00610

7p

109

1

s

conserved hypothetical protein

6

0.59

GIP_L1_00620

7p

218

1

 

conserved hypothetical protein

 

0.74

GIP_L1_00630

7p

496

1

s

conserved hypothetical protein

13

0.58

GIP_L1_00640

7p

127

2

s

conserved hypothetical protein

6

0.57

GIP_L1_00650

8p

253

1

s, t

EP1-like protein

 

6.01

GIP_L1_00660

8p

177

1

s, g

conserved hypothetical protein

 

0.92

GIP_L1_00670

8p

1132

1

s

dentin-like protein

 

0.72

GIP_L1_00680

III

599

1

s

hypothetical protein

  

GIP_L1_00690

III

130

1

 

hypothetical protein

  

GIP_L1_00700

IV

480

6

 

N-myristoyltransferase

  

GIP_L1_00710

IV

326

3

 

Hyaluronidase

  
  1. Gene identifier indicates the Genbank locus tag for each predicted gene. Region is the location of genes according to the delineations in Table 2. Sizes of the genes are given in amino acids. Signatures (Sigs) include "s" signal peptide, "t" trans-membrane domain, and "g" potential glycosylphosphatidylinisotol anchor. Family indicates the gene family to which the predicted gene belongs, if any. dN/dS ratios are given when applicable, and an "*" represents insufficient data to calculate a ratio, while a "u" represents a mathematically undefined ratio.
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BMC Microbiology

ISSN: 1471-2180

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