Table 7 Other repair related proteins in C. crescentus
From: Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus
Genes in E. coli | Description | Orthologs in C. crescentus | Similarity with E. colia |
|---|---|---|---|
dcm (472 aa) | DNA-cytosine methyltransferase | CC3626 | 158/395 (40%) |
dinG (716 aa) | probably ATP-dependent helicase | CC2038 | 213/479 (44%) |
dinB (pol IV) (351 aa) | Polymerase IV (damage-inducible protein B) | CC2466 | 185/320 (57%) |
dnaE (1160 aa) | subunit of DNA polymerase III | 1- CC1926; 2-CC3211 | 659/1121 (58%) 503/1090 (46%) |
dut (151 aa) | dUTPase | CC3713 | 86/136 (63%) |
lexA (202 aa) | regulator for SOS regulon | CC1902 | 110/205 (54%) |
lhr (1538 aa) | Lhr-like helicases | CC2040 | 373/973 (41%) |
lig (671 aa) | DNA ligase | 1-CC1522 NAD-dependent 2-CC3610 ATP-dependent | 427/678 (63%) absent |
mutT (129 aa) | mutT/NUDIX family | 1-CC0833 2-CC3382 3-CC0407 4-CC0418 5-CC1554 6-CC1126 7-CC3440 8-CC1346 9-CC3650 10-CC0266 11-CC2652 | 69/124 (55%) 47/91 (51%) 38/64* (59%) 32/60* (53%) 41/95 (43%) 33/69 (47%) 46/102 (45%) 27/56* (48%) 28/59* (47%) 22/45* (48%) 17/23* (73%) |
polB (783aa) | DNA polymerase II | absent | Â |
radC (222 aa) | DNA repair protein | 1-CC2680 2-CC2744 | 101/172 (58%) 38/56* (67%) |
umuC/umuD | pol V, Y-family DNA polymerase | absent | Â |
absent | imuA | CC3213 | Â |
absent | imuB, Y-family DNA polymerase | CC3212 | Â |