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Table 1 Acid/base expression ratios under oxygen limitation (4-fold or higher)

From: Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12

Acid up-regulated: log2 ratio Base up-regulated: log2 ratio
pH 5.7/7.0 pH 7.0/8.5 pH 5.7/8.5 pH 5.7/7.0 pH 7.0/8.5 pH 5.7/8.5
gadA 4.89 tdcB 2 3.17 hycA 4.75 ompF 2 -3.71 gadA -3.46 cpxP 2 -4.32
aidB 4.56 srlA 1 3.16 adiC 4.52 proV 2 -2.77 cpxP 2 -3.29 b3913 -4.07
yhiM 4.55 tdcD 3.15 hycE 3.70 yfdI 1 -2.72 b3913 2 -3.14 sdhC 1 -3.36
adiC 4.10 srlB 1 3.06 adiA 3.67 borD 2 -2.71 bdm -2.98 mutL 2 -3.17
sufB 3.84 cadB 3.02 citE 3.60 sdaC 2 -2.57 rmf 2 -2.57 proV 2 -3.11
gadC 3.73 mdtJ 1 2.91 yagU 1 3.60 sdhD 1 -2.47 gadB -2.50 borD 2 -2.94
adiA 3.67 srlD 1 2.87 citD 3.49 nmpC 2 -2.40 gadC -2.44 yfdI 1 -2.66
sufC 3.61 srlE 1 2.86 hydN 3.41 b2974 -2.28 gadE -2.23 yccA 2 -2.64
slp 3.47 lacA 2.53 yeiA 3.38 pppA 2 -2.10 rcsA 1 -2.23 ymgB -2.62
cbpM 3.45 tdcC 2.50 gatD 1 3.29    ymgB -2.19 ymgD -2.49
gadB 3.21 gatD 1 2.45 gatC 1 3.12    ycfS 2 -2.17 rcsA 1 -2.43
narH 3.20 fimA 1 2.38 yeiT 3.12    yjbJ -2.16 ycfS 2 -2.42
cbpA 3.19 hycA 2.30 cadB 3.08    osmB 2 -2.12 dctA -2.41
gadE 3.19 cadA 1 2.28 adiY 3.06    glpD -2.05 tgt 2 -2.39
mdtE 3.17 fimC 1 2.18 cadA 1 3.06    katE -2.01 yeaC 1 -2.35
narG 3.12 ykgA 1 2.09 mdtJ 1 3.02    mutL 2 -1.99 yebE 2 -2.31
yegP 3.07 argO 1 2.08 aidB 3.01      htpX 2 -2.27
ybaS 2.88 tdcF 2.05 yhiM 2.89      malM -2.24
cfa 1 2.83 nrfB 2.05 appC 2.88      mltD -2.22
hyaF 2.82 ompF 2 2.04 appB 2.75      oppB 1 -2.19
ygeW 2.82 yagU 1 2.03 ygeW 2.73      aceA -2.15
gadW 2.70 gatC 1 2.03 ykgA 1 2.68      bdm -2.14
citE 2.69    nrfB 2.62      b1172 -2.07
gadX 2.66    hyaF 2.58      fdoG 1 -2.04
citD 2.65    yccD 2.55      ompT 1 -2.03
ybeL 2.65    gatA 1 2.46       
fbaB 2.62    hycD 2.45       
dctR 2.60    gatB 1 2.37       
mdtF 2.58    appY 2.33       
narJ 2.58    appA 2.32       
sufA 2.55    gatR 2.32       
yccJ 2.54    nemA 1 2.31       
ybaT 2.49    yjdK 2.31       
dps 1 2.47    cfa 2.27       
hyaD 2.47    hyaD 2.27       
hycA 2.45    hyaA 2.26       
appB 2.44    cbpA 2.23       
appC 2.44    uspD 1 2.23       
yjbJ 2.42    lysC 1 2.20       
hyaC 2.41    hycF 2.19       
flgD 1 2.40    gatZ 2.16       
wrbA 2.39    hyaC 2.16       
adiY 2.37    hyaB 2.14       
hyaE 2.36    hycB 2.11       
yhcO 2.36    nrfA 2.06       
sufD 2.35    srlD 1 2.06       
hyaA 2.33    hyaE 2.02       
hyaB 2.32    yiiS 1 2.02       
uspB 2.32           
yeiA 2.32           
hdeD 2.30           
yjbQ 1 2.30           
yeiT 2.28           
ivy 2.26           
yhiD 2.26           
yjjU 1 2.26           
appA 2.24           
yebV 2.24           
ybhE 2.20           
psiF 2 2.19           
sra 1 2.13           
hycE 2.10           
yqjE 2.08           
yehE 2.06           
ydiH 1 2.03           
yqjD 2 2.03           
yjdI 2.02           
hydN 2.01           
yeaQ 1 2.01           
  1. 1Acid-induced with aeration [2]
  2. 2Base-induced with aeration [2]
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