Strain name
|
Population
|
HP0651
|
HP0379
|
HP0093
|
HP0619
|
jhp0562*
|
HP0208
|
jhp0820
|
HP0217
|
---|
JP9
|
hpEastAsia
| ○ | ● | ● | ● |
+
| ● |
absent
| ● |
GU17
|
hpEastAsia
| ● | ○ | ● |
missing
|
missing
| ● |
EMPTY
| ● |
GU5
|
hpEastAsia
| ● | ○ | ● |
absent
|
+
| ● |
EMPTY
| ● |
RE12001
|
hpEastAsia
| ● | ○ | ● | ● |
+
| ● |
EMPTY
| ● |
L133
|
hpEastAsia
| ● | ○ | ● | ● |
+
| ● | ⊙ | ● |
L7
|
hpLadakh
| ○ | ○ | ● |
missing
|
missing
|
absent
|
EMPTY
| ● |
L72
|
hpLadakh
| ● | ○ | ● | ● |
+
|
absent
|
EMPTY
| ● |
L67
|
hpLadakh
| ○ | ○ | ● |
absent
|
+
|
absent
|
EMPTY
| ● |
B225
|
hpEurope
| ● | ● | ● | ● |
+
| ● |
absent
| ● |
26695
|
hpEurope
| ● | ● | ● | ● |
absent
| ● |
absent
| ● |
SS1
|
hpEurope
| ○ | ● | ● | ● |
+
| ● | ● | ● |
H1413
|
hpEurope
| ● | ● | ● | ● |
+
| ● |
EMPTY
| ○ |
NQ367
|
hpEurope
| ○ | ● | ● | ● |
+
| ● | ● |
EMPTY
|
111UK
|
hpEurope
| ● | ● | ● | ● |
+
| ● |
EMPTY
| ● |
VZ21
|
hpEurope
| ● | ○ | ● |
absent
|
+
| ● | ● | ● |
105UK
|
hpEurope
| ○ | ● | ● | ● |
+
| ● | ● | ● |
LSU2003-1
|
hpAfrica1
| ○ | ● | ● | ● |
+
| ● | ● | ● |
J99
|
hpAfrica1
| ○ | ● | ● | ● |
+
| ● | ● | ● |
C164
|
hpAfrica1
| ○ | ● | ● | ● |
+
| ● | ⊙ | ● |
CC31C
|
hpAfrica1
| ○ |
missing
| ● | ● |
+
| ● | ● | ● |
CC42C
|
hpAfrica1
| ○ | ● | ● |
missing
|
missing
| ● | ○ |
EMPTY
|
129
|
hpAfrica2
| ○ | ● | ● | ● |
+
| ● | ● | ● |
162
|
hpAfrica2
| ○ | ● | ● | ● |
+
| ● |
absent
| ● |
- Status of the genes is coded as followed:
- ●, gene present and harbouring the repeat
- ○, phase variable gene present but repeat absent or stabilized (i.e. repeat interrupted by one or more bases or a homopolymeric tract < 7 bp or dinucleotide tracts with < 5 repeats)
- ⊙, phase variable gene harbouring a repeat, whereas a stabilized repeat was found previously [12]
- EMPTY, empty site, i.e. the phase variable gene was found using primers designed within the coding sequence in regions immediately adjacent to the phase variable tract [12], but the site is found to be empty in this study
- missing, missing data, i.e. the PCR product was obtained but could not be sequenced absent, gene absent
- * jhp0562 is a non phase variable homologue of HP0619 (+: jhp0562 present)