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Table 1 EV-71 and HEV-A sequences used for sequence analysis and construction of phylogenetic trees.

From: Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes

Abbreviation Strain Accession number Clinical presentation Reference
UH1 * UH1/PM/1997 EMBL: AM396587 Fatal 3
SHA89 * EV71/9/97/SHA89 EMBL: AJ586873 Fatal 21
SHA63 * EV71/SAR/SHA63 EMBL: AM396588 HFMD 3
SHA66 * EV71/SAR/SHA66 EMBL: AM396586 HFMD 3
SHA52 * ENT/PM/SHA52 EMBL: AM396584 HFMD 11
SHA71 * ENT/PM/SHA71 EMBL: AM396585 HFMD 11
5666 5666/sin/002209 EMBL: AF352027 HFMD 45
5865 5865/sin/000009 EMBL: AF316321 Fatal 45
BrCr BrCr Genbank: U22521 Aseptic meningitis 46
MS MS/7423/87 Genbank: U22522 Aseptic meningitis 46
TW2272 TW/2272/98 EMBL: AF119795 Fatal 47
TW2086 TW/2086/98 EMBL: AF119796 HFMD 47
NCKU9822 NCKU9822 EMBL: AF136379 Fatal 6
176044 1245a/98/tw EMBL: AF176044 HFMD 48
Tainan5746 Tainan/5746/98 EMBL: AF304457 HFMD 49
Tainan4643 Tainan/4643/98 EMBL: AF304458 Aseptic meningitis 49
Tainan6092 Tainan/6092/98 EMBL: AF304459 HFMD 49
SHZH98 SHZH98 EMBL: AF302996 HFMD 50
SHZH03 SHZH03 EMBL: AY465356 ? 51
CV-A2 CV-A2/Fleetwood EMBL: AY421760 Paralytic illness + 18
CV-A3 CV-A3/Olson EMBL: AY421761 Meningitis + 18
CV-A4 CV-A4/High Point EMBL: AY421762 Not known + 18
CV-A5 CV-A5/Swartz EMBL: AY421763 Poliomyelitis + 18
CV-A6 CV-A6/Gdula EMBL: AY421764 Meningitis + 18
CV-A7 CV-A7/Parker EMBL: AY421765 Bulbar poliomyelitis + 18
CV-A8 CV-A8/Donovan EMBL: AY421766 Sore throat, nuchal rigidity, muscle weakness + 18
CV-A10 CV-A10/Kowalik EMBL: AY421767 Meningitis + 18
CV-A12 CV-A12/Texas-12 EMBL: AY421768 Flies in polio community + 18
CV-A14 CV-A14/G-14 EMBL: AY421769 None + 18
CV-A16/G10 CV-A16/G-10 Genbank: U05876 HFMD 52
Tainan5079 Tainan/5079/98 EMBL: AF177911 HFMD 49
  1. * EV-71 isolates sequenced in the present study
  2. + Reference: 2