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Table 3 Predicted DtxR-regulated operons in C. diphtheriae

From: Prediction of DtxR regulon: Identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae

Synonym Gene Orthologue Product
DIP2158   COG1131 ABC-type transport system permease and ATPase component
DIP2159   COG1131 ABC-type transport system permease and ATPase component
DIP2160 - COG3321 Polyketide synthase modules and related proteins
DIP2161* - COG1020 Non-ribosomal peptide synthetase modules and related proteins
DIP0586 iucA Pfam04183 Catalyse discrete steps in biosynthesis of the siderophore aerobactin
DIP0587 - - Putative membrane protein
DIP0588 - - Putative membrane protein
DIP1059 fepC COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems
DIP1060 fepG COG4779 ABC-type enterobactin transport system
DIP1061* fepD COG0609 ABC-type Fe3+-siderophore transport system
DIP2162 ddpA COG0747 ABC-type peptide transport system periplasmic component
DIP2163 ddpB COG0601 ABC-type peptide/nickel transport systems permease components
DIP2164 ddpC COG1173 ABC-type peptide/nickel transport systems permease components
DIP2165 dpdD COG0444 ABC-type peptide/nickel transport systems ATPase component
DIP0169 lraI COG0803 ABC-type metal ion transport system, periplasmic component
DIP0170 znuC COG1121 ABC-type Mn/Zn transport systems, ATPase component
DIP0171 znuB COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components
DIP0172 znuB COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components
DIP0173 lraI COG0803 ABC-type metal ion transport system, periplasmic component
DIP2106 mdlB COG1131 ABC-type multidrug transport system, ATPase and permease component
DIP2107 mdlB COG1131 ABC-type multidrug transport system, ATPase and permease component
DIP0625 htaa Pfam04213 Haemin transporter associated protein
DIP0626 hmuT COG4558 ABC-type haemin transport system
DIP0627 hmuU COG0609 ABC-type Fe3+-siderophore transport system
DIP0628 hmuV COG4559 ABC-type haemin transport system
DIP0629* htaa Pfam04213 Haemin transporter associated protein
DIP1519* htaa pfam04213 Haemin transporter associated protein
DIP1520* htaa pfam04213 Haemin transporter associated protein
DIP2303 dps COG0783 Starvation inducible DNA-binding protein
DIP2304 - COG0266 Formamidopyrimidine-DNA glycosylase
DIP2305 - COG0063 Predicted sugar kinase
DIP1510 xerD COG4974 Site-specific recombinase
DIP1288 - - Conserved hypothetical protein
DIP1289 uup COG0488 ATPase components of ABC transporters with duplicated ATPase domains
DIP1290 - COG2151 Predicted metal-sulfur cluster biosynthetic enzyme
DIP1291 iscU COG0822 NifU homolog involved in Fe-S cluster formation
DIP1292 csd COG0520 Selenocysteine lyase
DIP1293 sufC COG0396 ABC-type transport system involved in Fe-S cluster assembly
DIP1294 - COG0719 ABC-type transport system involved in Fe-S cluster assembly
DIP1295 sufB COG0719 ABC-type transport system involved in Fe-S cluster assembly
DIP1296* deoR COG2345 DeoR family transcriptional regulator
DIP0370 - - Putative succinate dehydrogenease (cytochrome b)
DIP0371 - COG1053 Succinate dehydrogenase/fumarate reductase
DIP0372 - COG0479 Succinate dehydrogenase/fumarate reductase
DIP0373 - - Putative membrane protein
DIP0374 - - Putative membrane protein
DIP0375 - - Putative membrane protein
DIP0376 - - Putative membrane protein
DIP0377 - - Putative membrane protein
DIP1864 ctaD COG0843 Heme/copper-type cytochrome/quinol oxidases
DIP1865 nrdF1 COG0208 Ribonucleotide reductase
DIP2330 - - Putative membrane protein
DIP2331 - COG1012 NAD-dependent aldehyde dehydrogenases
DIP0124* - Pfam03929 Uncharacterized iron-regulated membrane protein (DUF337)
DIP0622 - - Putative membrane protein
DIP0623 metA COG2021 Homoserine acetyltransferase
DIP0624 - - Putative membrane protein
DIP0415 - Pfam01022 Bacterial regulatory protein
DIP0539 - COG3839 ABC-type sugar transport systems
DIP0168 - - Putative glycosyl transferase
DIP0417 - - Putative membrane protein
DIP0142 - - Hypothetical protein
DIP0143 - - -
DIP0144 tra8 COG2826 Transposase and inactivated derivatives
DIP2271 - - Putative membrane protein
DIP2272 - COG3764 Sortase (surface protein transpeptidase)
DIP0699 secA COG0653 Preprotein translocase subunit SecA (ATPase
DIP0700 - - Hypothetical protein
DIP0540* secY Pfam00344 Eubacterial secY protein
DIP0541 Adk COG0563 Adenylate kinase and related kinases
DIP0542 mapA   Methionine aminopeptidase
DIP0543 - - Sialidases or neuraminidases;
DIP0544 erfK Pfam03734 This family of proteins contains a conserved histidine and cysteine
DIP0545 infA COG0361 Translation initiation factor 1 (IF-1)
DIP0546 rpsM COG0099 Ribosomal protein S13
DIP0547 rpsK COG0100 Ribosomal protein S11
DIP0548 rpsD COG0522 Ribosomal protein S4 and related proteins
DIP0549 rpoA COG0202 DNA-directed RNA polymerase
DIP0550 rplQ COG0203 Ribosomal protein L17
DIP0551 truA COG0101 Pseudouridylate synthase
  1. Note: * Indicate the genes reported be regulated by DtxR. Genes listed together belongs to same operon.