Table 2 Target DNA sequences of the putative SOS genes of the R20291 strain used for the SPR analysis
GENE | Function | Product | Putative LexA operator (R20291 strain) (5`- -3`) | Distance from CDS |
|---|---|---|---|---|
lexA | SOS response | Transcriptional regulator. LexA repressor | AGGAAC AAATGTTT GC | −51/-91 |
recA | SOS response/DNA repair | Protein RecA (Recombinase A) | GAGAAC AAATGTTT GT | −39/-41 |
ruvC | DNA repair | Crossover junction endodeoxyribonuclease | TAGAAC ATAAGTTT TT | −65 |
uvrB | DNA repair | Excinuclease ABC subunit B | AGGAAC TAATGTTC GA | −30 |
sspB | Spores | Small. acid-soluble spore protein beta | CAGAAC AGTAGTTC CA | 34 |
oppC | Spores/ABC transporter | ABC-type transport system. oligopeptide-family | TAGAAC ATAAAAAT TT | −285/-286 |
soj | Regulation of DNA replication | protein Soj | TTGAAC TTTAGTTT CT | −226 |
CDR20291 _2297 | Antibiotics | Putative multidrug efflux pump | AAGAAC ATCTGAAA AG | −138 |
vanR | Antibiotics | Response regulator VanR | CAGAAC TATTATTT TA | −222 |
rplR | DNA/RNA | 50S ribosomal protein L18 | ATGAAC TTAGGTTT CT | −261/-262 |
rpoB | DNA/RNA | DNA-directed RNA polymerase subunit beta | ATGAAC TATTGTTT TA | −42/-43 |
potC | Biofilm | ABC-type transport system. spermidine/putrescine | TGGAAC TTTGGTTC AG | −207 |
tcdA | Toxicity | Toxin A | GTGAAC CAATGTTT GA | −525 |
CDR20291 _2689 | Cell wall/membrane | Putative membrane protein | TGGAAC TTTAGTTC TA | −111 |
CDR20291 _2056 | Signalling | Putative endonuclease/exonuclease/phosphatase | AAAAAC ACCCGTTC TGCAAAC ATTCGTTC TG | −466 |
NAP07v1 _640016 | Signalling/Chemotaxis | Two-component sensor histidine kinase | GAGAAC CTGTGTTT TT | −217 |
cbiQ | Transport | Cobalt transport protein | ATGAAC CATGGTTT AG | −122 |
aroF | Transport | Phospho-2-dehydro-3-deoxyheptonate aldolase | ATGAAC TATTCTTT CT | −225 |
vexP | ABC transporter | ABC transporter. ATP-binding/permease protein | AAGTTC AAATTTTT GA | −85 |
97b34v1 _250108 | ABC transporter | ABC-type transport system sugar-family | AAGAAC TAAAGTTC CT | −267 |