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Table 2 Target DNA sequences of the putative SOS genes of the R20291 strain used for the SPR analysis

From: The LexA regulated genes of the Clostridium difficile

GENE Function Product Putative LexA operator (R20291 strain) (5`- -3`) Distance from CDS
lexA SOS response Transcriptional regulator. LexA repressor AGGAAC AAATGTTT GC −51/-91
recA SOS response/DNA repair Protein RecA (Recombinase A) GAGAAC AAATGTTT GT −39/-41
ruvC DNA repair Crossover junction endodeoxyribonuclease TAGAAC ATAAGTTT TT −65
uvrB DNA repair Excinuclease ABC subunit B AGGAAC TAATGTTC GA −30
sspB Spores Small. acid-soluble spore protein beta CAGAAC AGTAGTTC CA 34
oppC Spores/ABC transporter ABC-type transport system. oligopeptide-family TAGAAC ATAAAAAT TT −285/-286
soj Regulation of DNA replication protein Soj TTGAAC TTTAGTTT CT −226
CDR20291 _2297 Antibiotics Putative multidrug efflux pump AAGAAC ATCTGAAA AG −138
vanR Antibiotics Response regulator VanR CAGAAC TATTATTT TA −222
rplR DNA/RNA 50S ribosomal protein L18 ATGAAC TTAGGTTT CT −261/-262
rpoB DNA/RNA DNA-directed RNA polymerase subunit beta ATGAAC TATTGTTT TA −42/-43
potC Biofilm ABC-type transport system. spermidine/putrescine TGGAAC TTTGGTTC AG −207
tcdA Toxicity Toxin A GTGAAC CAATGTTT GA −525
CDR20291 _2689 Cell wall/membrane Putative membrane protein TGGAAC TTTAGTTC TA −111
CDR20291 _2056 Signalling Putative endonuclease/exonuclease/phosphatase AAAAAC ACCCGTTC TGCAAAC ATTCGTTC TG −466
NAP07v1 _640016 Signalling/Chemotaxis Two-component sensor histidine kinase GAGAAC CTGTGTTT TT −217
cbiQ Transport Cobalt transport protein ATGAAC CATGGTTT AG −122
aroF Transport Phospho-2-dehydro-3-deoxyheptonate aldolase ATGAAC TATTCTTT CT −225
vexP ABC transporter ABC transporter. ATP-binding/permease protein AAGTTC AAATTTTT GA −85
97b34v1 _250108 ABC transporter ABC-type transport system sugar-family AAGAAC TAAAGTTC CT −267