|
Sample ID
|
Serotype
|
Total reads mapped against serotype sequences
|
% reads mapped against correct serotype
|
% reads mapped against the second match
|
Serotype(s) identified
|
|---|
| | | | | |
Criterion 1*
|
Criterion 2**
|
Criterion 3***
|
|---|
|
1
|
1
|
4,711
|
91.9
|
3.0
|
1
|
1
|
1
|
|
2
|
2
|
2,245
|
76.8
|
8.9
|
2
|
2
|
2
|
|
3
|
3
|
160
|
0
|
75.0
|
Wrong allocation of serotype
|
Insufficient reads
|
Insufficient reads
|
|
4
|
4
|
4,985
|
77.2
|
10.3
|
4
|
4
|
4
|
|
5
|
5
|
915
|
96.1
|
1.3
|
5
|
5
|
5
|
|
6
|
6B
|
2,213
|
96.8
|
1.0
|
6
|
6
|
6
|
|
7
|
6A
|
1,241
|
91.8
|
3.9
|
6
|
6
|
6
|
|
8
|
7F
|
222
|
81.5
|
6.3
|
7A/F
|
7A/F
|
Insufficient reads
|
|
9
|
8
|
2,955
|
77.4
|
3.985
|
8
|
8
|
8
|
|
10
|
9V
|
4,823
|
75.5
|
14.1
|
9A/V
|
9A/V
|
9A/V
|
|
11
|
9N
|
4,987
|
88.7
|
3.0
|
9N/L
|
9N/L
|
9N/L
|
|
12
|
10A
|
4,257
|
81.4
|
6.9
|
10A/B
|
10A/B
|
10A/B
|
|
13
|
11D
|
1,703
|
84.9
|
5.9
|
11A/D
|
11A/D
|
11A/D
|
|
14
|
12F
|
5,625
|
94.7
|
1.9
|
12/44/46
|
12/44/46
|
12/44/46
|
|
15
|
14
|
2,110
|
88.3
|
3.1
|
14
|
14
|
14
|
|
16
|
15B
|
998
|
84.9
|
3.1
|
15B/C
|
15B/C
|
15B/C
|
|
17
|
17F
|
1,357
|
72.7
|
7.3
|
17F
|
17F
|
17F
|
|
18
|
18C
|
2,418
|
84.5
|
3.9
|
18
|
18
|
18
|
|
19
|
19A
|
3,124
|
82.0
|
7.7
|
19F
|
19F
|
19F
|
|
20
|
19F
|
2,864
|
87.7
|
4.9
|
19A
|
19A
|
19A
|
|
21
|
20
|
169
|
36.7
|
27.2
|
Serotypes 20 and incorrect identification of serotype 23F
|
Insufficient reads
|
Insufficient reads
|
|
22
|
22F
|
1,948
|
92.8
|
3.7
|
22F/A
|
22F/A
|
22F/A
|
|
23
|
23F
|
1,877
|
95.1
|
2.6
|
23F
|
23F
|
23F
|
|
24
|
33F
|
625
|
94.4
|
2.4
|
33F/A/37
|
33F/A/37
|
33F/A/37
|
-
* Criterion 1: Any serotype with >15% sequence reads mapped assigned to the sample.
- **Criterion 2: Samples with >200 reads considered for further typing AND fulfilled criterion 1.
- ***Criterion 3: Samples with >500 reads considered for further typing AND fulfilled criterion 1.
