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Table 2 Base detected at SNPs by pyrosequencing, SCGs and PGGs

From: Single nucleotide polymorphism (SNP) analysis used for the phylogeny of the Mycobacterium tuberculosis complex based on a pyrosequencing assay

Base at SNP site

1977

74092

105139

232574

311613

913274

2460626

3352929

gyrA95

PGG

SCG

G

C

A

G

T

C

C

G

C

1

2

G

C

C

G

T

C

C

G

C

1

3a

G

C

C

G

T

C

C

G

C

2

3b

G

C

C

T

T

C

Ca

Ga

C

2

3c

G

C

C

T

T

C

Aa

Ga

C

2

4

G

C

C

G

T

C

C

C

C

2

5

A

C

C

G

T

C

C

C

G

3

6a

A

C

C

G

G

C

C

C

G

3

6b

G

T

C

G

T

G

C

G

C

1

7

G

C

C

G

T

G

C

G

C

1

1

A

C

C

G

T

C

C

G

G

3

6c*

  1. Table adapted from Bouakaze and co-workers [15] and ainferred from Filliol and coworkers [16]. *New pattern SCG-6c.
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BMC Microbiology

ISSN: 1471-2180

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