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Table 1 Differentially expressed genes in strain EC-2 ( P < 0.05, |log 2 FC| ≥ 1.0)

From: Electrochemical selection and characterization of a high current-generating Shewanella oneidensis mutant with altered cell-surface morphology and biofilm-related gene expression

Locus tag Gene Putative function COG description1 Log2FC2
Up-regulated genes
SO_0817 metR Transcriptional activator protein MetR Transcription 3.33
SO_0818 metE 5-Methyltetrahydropteroyltriglutamate-homocysteine methyltransferase Amino acid transport and metabolism 6.49
SO_1101 luxS S-Ribosylhomocysteinase Signal transduction mechanisms 1.65
SO_1860 – Response regulator Signal transduction mechanisms, Transcription 5.97
SO_2404 aroA 3-Phosphoshikimate 1-carboxyvinyltransferase Amino acid transport and metabolism 1.17
SO_3471 glyA Serine hydroxymethyltransferase Amino acid transport and metabolism 1.55
SO_3534 murJ Peptidoglycan lipid II flippase General function prediction only 1.17
SO_4189 – Hypothetical protein SO_4189 Carbohydrate transport and metabolism 1.04
SO_4233 leuD Isopropylmalate isomerase small subunit Amino acid transport and metabolism 1.69
SO_4596 – Copper-transporting ATPase domain-containing protein – 2.09
SO_4731 add Adenosine deaminase Nucleotide transport and metabolism 1.42
Down-regulated genes
SO_0351 – LuxR family DNA-binding response regulator Signal transduction mechanisms, Transcription -1.04
SO_1861 uvrC Excinuclease ABC subunit C Replication, recombination and repair -1.30
SO_2005 – DksA-type zinc finger protein Signal transduction mechanisms -1.16
SO_2906 – Hypothetical protein SO_2906 Inorganic ion transport and metabolism -1.92
SO_2945 – Lambda phage tail fiber protein – -1.45
SO_2946 – Lambda phage protein with carbohydrate-binding module – -1.10
SO_2953 H Prophage LambdaSo, tail length tape meausure protein Function unknown -1.48
SO_2954 – Hypothetical protein SO_2954 – -1.53
SO_2955 – Lambda phage minor tail protein G – -1.62
SO_2956 – Prophage LambdaSo, major tail protein V, putative – -1.60
SO_2957 – Lambda phage protein of unknown function – -1.35
SO_2965 – Prophage LambdaSo, HK97 family portal protein Function unknown -1.24
SO_2968 – Phage terminase small subunit Replication, recombination and repair -1.03
SO_2969 – Prophage LambdaSo, holin, putative Defense mechanisms -1.24
SO_4564 – TonB2 protein, putative Cell wall/membrane/envelope biogenesis -1.15
  1. 1Functional categorization by COG.
  2. 2Log2-transformed fold change (EC-2/∆SO_1860).
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BMC Microbiology

ISSN: 1471-2180

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