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Table 1 Genes of the genome island and assigned functions in the metabolism of monoterpenes in Castellaniella defragrans 65Phen

From: The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen

Protein_id Proteine detection methoda 2D fold change/LC enrichment levelb Gene annotation Related gene product
E value % identity Organism Accession no.
CDM25240 n.d. n.d. Hypothetical protein 4E-60 59 Thauera terpenica 58Eu EPZ16239
CDM25241 LC ++ Acyl-CoA dehydrogenase protein 0.0 82 Thauera terpenica 58Eu EPZ16240
CDM25242 LC 0 Molybdopterin-binding OR 3E-70 74 Thauera terpenica 58Eu EPZ16227
CDM25243 n.d. n.d. Tyrosine/serine phosphatase 1E-58 48 Thauera linaloolentis 47Lol ENO83508
CDM25244 LC 0 2,4-dienoyl-CoA reductase 0.0 87 Thauera terpenica 58Eu EPZ16243
CDM25245 n.d. n.d. NADH:flavin oxidoreductase 1E-179 68 Thauera terpenica 58Eu EPZ16244
CDM25246 2D/LC 3.0/++ 3-hydroxyacyl-CoA dehydrogenase 5E-167 82 Azoarcus sp. KH32C YP_007598290
CDM25247 n.d. n.d. IS4 family transposase 0.0 63 Thiomonas sp. FB-6 WP_018915433
CDM25248, MrcH n.d. n.d. MaoC-like dehydratase 2E-36 62 Azoarcus sp. KH32C YP_007598291
CDM25249, MrcG n.d. n.d. MaoC-like dehydratase 6E-50 67 Thauera terpenica 58Eu EPZ16257
CDM25250, MrcF LC ++ Perillyl-CoA hydratase 0.0 58 Thauera terpenica 58Eu EPZ16258
CDM25251, MrcE 2D/LC 18/++ 4-isopropenyl-2-oxo-cyclohexane-1-carboxyl-CoA hydrolase 4E-167 88 Azoarcus sp. KH32C YP_007598294
CDM25252, MrcD 2D/LC 3.0/++ 2-hydroxy-4-isopropenyl-cyclohexane-1-carboxyl-CoA dehydrogenase 1E-153 85 Azoarcus sp. KH32C YP_007598295
CDM25253, MrcC 2D 2,3 2,4-dienoyl reductase 0.0 86 Thauera terpenica 58Eu EPZ16261
CDM25254, MrcB LC ++ Acyl-CoA dehydrogenase 0.0 90 Azoarcus toluclasticus WP_018990727
CDM25255, MrcA LC ++ Oxidoreductase, FAD-binding 0.0 73 Azoarcus toluclasticus WP_018990723
CDM25256 2D/LC 19/++ (R)-specific enoyl-CoA hydratase 1E-88 85 Thauera terpenica 58Eu EPZ15051
CDM25257 LC 0 Citrate lyase 6E-141 73 Thauera terpenica 58Eu EPZ15052
CDM25258 LC ++ Acyl-CoA dehydrogenase 0.0 92 Thauera terpenica 58Eu EPZ15053
CDM25259 LC ++ RND efflux transporter 0.0 62 Thauera terpenica 58Eu EPZ15054
CDM25260 LC ++ RND efflux transporter 0.0 80 Thauera terpenica 58Eu EPZ15055
CDM25261 LC ++ RND efflux transporter 4E-142 68 Thauera terpenica 58Eu EPZ15056
CDM25262 LC ++ RND efflux transporter 0.0 81 Thauera terpenica 58Eu EPZ15057
CDM25263 LC ++ Acetoacetyl-CoA synthetase 0.0 84 Thauera terpenica 58Eu EPZ15058
CDM25264 n.d. n.d. Enoyl-CoA hydratase 9E-136 76 Thauera terpenica 58Eu EPZ15059
CDM25265, GeoC LC ++ Perillate--CoA ligase 0.0 71 Thauera terpenica 58Eu EPZ15060
CDM25266 LC 0 Hypothetical protein 4,3 52 Fusarium graminearum PH-1 XP_382023
CDM25267, GeoA 2D/LC 42/++ Geraniol dehydrogenase 0.0 84 Thauera terpenica 58Eu EPZ14350
CDM25268 LC ++ Hypothetical protein 8E-117 74 Thauera terpenica 58Eu EPZ14349
CDM25269 n.d. n.d. Hypothetical protein 2E-97 69 Thauera terpenica 58Eu EPZ14348
CDM25270 n.d. n.d. Hypothetical protein 6E-32 66 Thauera terpenica 58Eu EPZ14347
CDM25271 n.d. n.d. Thioesterase 2E-33 46 Magnetospirillum magneticum YP_420191
CDM25272, LDI LC ++ LDI precursor protein 8E-14 25 Stereum hirsutum FP-91666 SS1 EIM80109
CDM25273 n.d. n.d. Hypothetical protein 5E-85 43 Gordonia paraffinivorans WP_006900876
CDM25274 n.d. n.d. Hypothetical protein 5E-07 30 Gordonia paraffinivorans WP_006900845
CDM25275 LC ++ Acyl-CoA dehydrogenase 4E-106 54 Azoarcus toluclasticus WP_018990670
CDM25276 n.d. n.d. Hypothetical protein 4E-40 40 Glaciecola punicea WP_006005307
CDM25277 n.d. n.d. Hypothetical protein 5E-21 58 Pseudomonas sp. 19-rlim AEO27370
CDM25278 n.d. n.d. Hypothetical protein 1E-69 62 Pseudomonas sp. 19-rlim AEO27371
CDM25279 LC ++ Hypothetical protein 1E-120 68 Pseudomonas sp. 19-rlim AEO27372
CDM25280 n.d. n.d. MarR transcriptional regulator 7E-81 83 Thauera terpenica 58Eu EPZ16291
CDM25281, GeoB 2D/LC 15/++ Geranial dehydrogenase 0.0 91 Thauera terpenica 58Eu EPZ16290
CDM25282 LC ++ Acyl-CoA dehydrogenase 0.0 89 Thauera terpenica 58Eu EPZ16289
CDM25283 n.d. n.d. LuxR family transcriptional regulator 0.0 59 Thauera terpenica 58Eu EPZ16271
CDM25284, CtmG LC ++ Hypothetical protein 5E-35 39 Azoarcus sp. KH32C YP_007598506
CDM25285, CtmF LC ++ NADH:ferredoxin oxidoreductase 4E-147 56 Caulobacter sp. AP07 WP_007674692
CDM25286, CtmE 2D 6.3/++ Ferredoxin, 2Fe-2S 1E-32 50 Caulobacter crescentus CB15 NP_422318
CDM25287, CtmD n.d. n.d. Hypothetical protein 4,1 38 Ochrobactrum sp. CDB2 WP_007881652
CDM25288, CtmC n.d. n.d. Hypothetical protein 2,3 33 Bombus impatiens XP_003489707
CDM25289, CtmB 2D/LC 3.4/++ Limonene dehydrogenase 4E-131 41 Deltaproteobacterium NaphS2 WP_006422074
CDM25290, CtmA LC ++ Limonene dehydrogenase 5E-57 30 Deltaproteobacterium NaphS2 WP_006422074
CDM25291 LC ++ Acetyl-CoA acetyltransferase 0.0 79 Thauera terpenica 58Eu EPZ16237
CDM25292 LC 0 MarR transcriptional regulator 2E-76 77 Thauera terpenica 58Eu EPZ16235
CDM25293 n.d. n.d. Hypothetical protein 4E-24 56 Thauera terpenica 58Eu EPZ16283
CDM25294 LC ++ Hypothetical protein 2E-83 68 Thauera terpenica 58Eu EPZ16282
CDM25295 n.d. n.d. Hypothetical protein 6E-155 76 Thauera terpenica 58Eu EPZ16281
CDM25296 n.d. n.d. MarR transcriptional regulator 5E-94 81 Thauera terpenica 58Eu EPZ16280
CDM25297 n.d. n.d. Hypothetical protein 2E-168 72 Thauera terpenica 58Eu EPZ16232
CDM25298 LC ++ Hypothetical protein 0.0 72 Thauera terpenica 58Eu EPZ16231
CDM25299 LC ++ Acetyl-CoA acetyltransferase 0.0 90 Thauera terpenica 58Eu EPZ16230
CDM25300 n.d. n.d. Acetyl-CoA hydrolase/transferase 0.0 74 Thauera terpenica 58Eu EPZ16229
CDM25301 LC ++ Electron transfer flavoprotein 7E-133 78 Thauera terpenica 58Eu EPZ16226
CDM25302 n.d. n.d. Electron transfer flavoprotein 7E-160 76 Azoarcus sp. KH32C YP_007552025
  1. a2D, identified with 2D-SDS-PAGE and MALDI-TOF-MS; LC, identified with LC-ESI-MS/MS.
  2. b++ peptides only identified in α-phellandrene fraction, + increase in α-phellandrene fraction, 0 ratio remained unchanged.