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Table 1 Aeromonas strains used in this study

From: Clustering subspecies of Aeromonas salmonicida using IS630typing

JF N°

Synonyme

Species

Subspecies

Origin

Identified virulence characteristics

Pigment production (Day 6)

Ref

JF2996

Austin98

salmonicida

salmonicida

Sediment in Riccarton Loch, Scotland

ascV-, ascU-, aexT+, aopP+, aopO-, aopH+

+++

[17, 18]

JF3507

ATCC 33658 T, NCIMB 1102 T

salmonicida

salmonicida

Salmo salar, Scotland

ascV-, aexT+, aopP+, aopO+, aopH+, acrD-

+++

[18–20]

JF3327

F330/04

salmonicida

salmonicida

Arctic char, Switzerland, 2004

ascV+, aexT+, aopP+, aopO+, aopH+

++++

[18]

JF3517

4757

salmonicida

salmonicida

Turbot, Norway

ascV+, aexT+, aopP+, aopO+, aopH+

++++

[18]

JF2267

Fi 94 G

salmonicida

salmonicida

Arctic char, Switzerland, 1999

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+, acrD+

+++

[17, 18, 20]

JF2869

CCUG 47405 (A)

salmonicida

salmonicida

Arctic char (Savelinus alpinus)

aexT+, SacrD 3 ′ +

++++

-

JF3223

Fi 210

salmonicida

salmonicida

White fish, Switzerland, 1997

ascV+, aexT+, aopP+, aopO+, aopH+

++++

[18]

JF3224

R04/170

salmonicida

salmonicida

Brown trout, Switzerland, 2004

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+

++++

[17, 18]

JF3518

4704

salmonicida

salmonicida

Turbot, Norway

ascV+, aexT+, aopP+, aopO+, aopH+

++++

[18]

JF2509

CC72 - D640

salmonicida

salmonicida

Atlantic salmon, Canada, before 1960

ascV+, aexT+, aopP+, aopO+, aopH+, acrD+

++++

[18, 20]

JF3519

3294

salmonicida

salmonicida

Arctic char, Switzerland, 1986

ascV-, aexT+, aopP+, aopO+, aopH-

++++

[18]

JF2506

CC 27–80/9-1

salmonicida

salmonicida

Atlantic salmon Norway

ascV+, aexT+, aopP+, aopO+, aopH+, acrD+

++++

[18, 20]

JF2507

CC 29 - 74/2

salmonicida

salmonicida

Atlantic salmon, Scotland

ascV+, aexT+, aopP+, aopO+, aopH+, acrD+

++++

[18, 20]

JF2508

CC 63- D-615

salmonicida

salmonicida

Atlantic salmon, Canada

ascV+, aexT+, aopP+, aopO+, aopH+, acrD+

++++

[18, 20]

JF2510

CC 23/8019-5

salmonicida

salmonicida

Atlantic salmon Norway

ascV+, aexT+, aopP+, aopO+, aopH+, acrD+

++++

[18, 20]

JF3521

2265

salmonicida

salmonicida

Wild atlantic salmon, Norway 1991

ascV-, aexT+, aopP+, aopO+, aopH-

++++

[18]

JF3496

F05/160

salmonicida

salmonicida

Wild brown trout, Switzerland, 2005

ascV+, aexT+, aopP+, aopO+, aopH+

+++

[18]

JF3844

F06/417

salmonicida

salmonicida

Arctic char, Switzerland, 2006

ascV+, aexT+, aopP+, aopO+, aopH+

+++

[18]

JF2505

MT 44/SS 10

salmonicida

-

non virulent for trout, Canada

A+, LPS+, acrD-

+++

[20]

JF3791

F06/385

salmonicida

-

Arctic char Salvelinus alpinus, Switzerland, 2006

ascV+, aexT+, aopP-aopO+, aopH+

+++

[18]

JF4111

F07/357(NiA)

salmonicida

-

Salvelinus, Switzerland, 2007

ND

+++

-

JF4112

F07/357 (NiB)

salmonicida

-

Salvelinus, Switzerland, 2007

ND

+++

-

JF4113

F07/357 (NiC)

salmonicida

-

Salvelinus, Switzerland, 2007

ND

+++

-

JF3121

As209

salmonicida

salmonicida [formerly atypical]

Wolf fish, UK

ascV-, ascU-

+++

[17]

JF4714

IMD1520

salmonicida

-

Thymallus thymallus (skin), Switzerland, 2009

ND

+++

-

JF4715

IMD 1521

salmonicida

-

Thymallus thymallus (kidney), Switzerland, 2009

ND

+++

-

JF4114

F07/357(LeA)

salmonicida

-

Salvelinus (liver), Switzerland, 2007

ND

+++

-

JF4115

F07/357 (LeB)

salmonicida

-

Salvelinus (liver), Switzerland, 2007

ND

+++

-

JF4116

F07/357 (LeC)

salmonicida

-

Salvelinus (liver), Switzerland, 2007

ND

+++

-

JF4118

F07/(MiB)

salmonicida

-

Salvelinus (kidney), Switzerland, 2007

ND

+++

-

JF4119

F07/357 (MiC)

salmonicida

-

Salvelinus (kidney), Switzerland, 2007

ND

+++

-

JF4117

F07/357 (MiA)

salmonicida

salmonicida

Salvelinus (spleen), Switzerland, 2007

ND

++++

-

JF3122

As204

salmonicida

atypical

Wrasse UK

ascV+, aexT+, aopP + aopO-, aopH+

++

[18]

JF3500

aAs 4143

salmonicida

atypical

Atlantic cod, Norway

ascV+, aexT+, aopP + aopO+, aopH-

++

[18]

JF3666

F06/211

salmonicida

atypical

Bleak (Alburnus alburnus), Switzerland, 2006

ascV+, aexT+, aopP- aopO-, aopH+

-

[18]

JF3124

As93

salmonicida

atypical

Plaice, Denmark

ascV+, aexT+, aopP + aopO+, aopH+

-

[18]

JF3520

4818

salmonicida

atypical

Atlantic Halibut, Norway, 2003

ascV+, aexT-, aopP + aopO-, aopH+

-

[18]

JF3115

ATCC 19261, NCIMB 1109

salmonicida

achromogenes

Salmo trutta

ND

+

-

JF3116

NCIMB 1110 T

salmonicida

achromogenes

Trout, Scotland

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+

++

[17–19]

JF2997

F-265/87

salmonicida

achromogenes

Atlantic salmon, Iceland

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+

++

[17, 18]

JF3123

As183

salmonicida

achromogenes [formerly atypical]

Arctic char, Iceland

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+

++

[17, 18]

JF3499

aAs4101

salmonicida

achromogenes

Atlantic Cod, Iceland

ascV+, aexT+, aopP + aopO+, aopH-

-

[18]

JF3125

As 51

salmonicida

atypical

Rainbow trout, Norway

ascV+, aexT+, aopP- aopO+, aopH+

-

[18]

JF4097

-

salmonicida

smithia

Salvelinus alpinus lepeschini, Austria

ascV+, aexT+, aopP+, aopO-, aopH+

-

[21]

JF4460

-

salmonicida

smithia

Salvelinus alpinus lepeschini, Austria

ascV-, aexT+, aopP+, aopO-, aopH+

-

[21]

JF4439

-

salmonicida

smithia

Salvelinus alpinus lepeschini, Austria

ascV+, aexT+, aopP+, aopO-, aopH+

-

[21]

JF3117

NCMB13210, ATCC 49393

salmonicida

smithia

Roach, England

ascV+, ascU+, aexT+, aopP-, aopO+, aopH+

-

[17–19]

JF3126

As 54

salmonicida

atypical

Rainbow trout, Norway

ascV-, aexT+, aopP-, aopO-, aopH-

++

[18]

JF3502

aAs 4067

salmonicida

atypical

Spotted wolffish, Norway

ascV+, aexT+, aopP+, aopO+, aopH+

+

[18]

JF3118

ATCC 27013 T

salmonicida

masoucida

Salmon, Japan

ascV+, ascU+, aexT+, aopP-, aopO-, aopH+

-

[17–19]

JF3119

NCMB 2020

salmonicida

masoucida

same as ATCC 27013 (salmon, Japan)

ND

-

-

JF2512

CC 30/8038

salmonicida

atypical

Atlantic salmon, Canada, before 1960

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+, acrD+

-

[17, 18, 20]

JF2513

CC 34/8030

salmonicida

atypical

Atlantic salmon, Canada, before 1960

ascV+, ascU+, aexT+, aopP+, aopO+, aopH+, acrD+

-

[17, 18, 20]

JF3328

848 T

molluscorum

-

Type strain

ND

-

[22]

JF3071

ATCC 51106, bg sobria HG8

veronii

-

?

ND

-

[19]

JF2635

429/01 # 1c; official JF2635

sobria

-

Perca fluviatilis, Switzerland, 2001

ascV+, ascU+, acrD+

-

[17]

JF3326

-

popoffii

-

Urinary tract infection, France

ND

-

[23]

JF3120

DSM 12609 T

salmonicida

pectinolytica

River water

ascV-, aexT-, aopP-, aopO-, aopH-

++++

[17, 19]

JF3240

LMG 17542, IK-B-r-15-1

popoffii

-

Drinking water production plant, Belgium

ND

-

[24]

JF2796

CECT 4199

allosaccharophila

-

Type strain

ND

-

[19]

JF3242

LMG 17547, AG-9

popoffii

-

Drinking water treatment plant, Scotland

ND

-

[24]

JF2797

LMG 17541T, IK-0-a-10-3

popoffii

-

Drinking water production plant, Belgium

ND

-

[19, 24]

JF3241

LMG 17544, IK-E-a- 14- 1

popoffii

-

Drinking water production plant, Belgium

ND

-

[24]

JF2905

Fi 125

sobria

-

Perch

ascV+

-

[25]

JF2791

ATCC 33907

media

-

Type strain NENT Nr. 2346-98

ascV+, ascU+

-

[17, 19]

JF2899

F86/03-2

sobria

-

Perch

ascV+

-

[25]

JF2806

F533E

popoffii

-

Tap water, Switzerland, 2003

ND

-

[19]

JF2808

F600C

popoffii

-

Tap water, Switzerland, 2003

ND

-

[19]

JF2807

F548B

popoffii

-

Tap water, Switzerland, 2003

ND

-

[19]

JF 3954

868ET

bivalvium

-

Bivalve molluscs; Type strain

ND

-

[26]

JF2637

Fi 303

hydrophila

-

Ornamental fish

ND

-

-

JF2794

ATCC 49657, NENT Nr.2360-98

trota (enteropelogenes)

-

Human feces, India

ND

-

[19]

JF2785

CDC 9533-76

bestiarum

-

Type strain NENT Nr: N2341-98

ND

-

[19]

JF 4032

A28)A28B/1-1

bestiarum

-

Wild perch (Perca fluviatilis), Switzerland, 2007

ND

-

-

JF 4608

A28) 28B/1-1

bestiarum

-

Wild perch, Switzerland, 2009

ascV+

-

[22]

JF2804

F 530 D

bestiarum

-

Tap water

ND

-

-

JF3018

68

bestiarum

-

River water

ND

-

-

JF3070

S 6874 T

simiae

-

Type strain

ND

-

[19]

JF2786

ATCC 15468

caviae

-

Type strain NENT Nr. N2344-98

ND

-

[19]

JF2789

ATCC 7966

hydrophila

-

Type strain NENT Nr. : N2339-98

ND

-

[19]

JF2793

CIP 7433; ATCC 43979

sobria

-

Type strain NENT Nr.2352

ND

-

[19]

JF2929

Fi 179a

sobria

-

Perch, Switzerland

ascV + SacrD+

-

[22]

JF2788

NCMB 74; ATCC 23309

eucrenophila

-

Type strain NENT Nr. N2348-98

ND

-

[19]

JF3069

ATCC 49904 T

ichthiosmia

-

Type strain Antonella Demarta

ND

-

-

JF2790

ATCC 49568

jandaei

-

Type strain NENT Nr. 2355-98

ND

-

[19]

JF3067

CIP 107763 T

culicicola

-

Type strain

ND

-

[19]

JF3068

ATCC 49803 T

enteropelogenes

-

Type strain

ND

-

-

  1. ND: not determined.
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BMC Microbiology

ISSN: 1471-2180

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