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Table 4 List of all S. T yphiurium CRISPR-MVLST S equence T ypes (TSTs) that were identified in this study

From: CRISPR-MVLST subtyping of Salmonella enterica subsp. entericaserovars Typhimurium and Heidelberg and application in identifying outbreak isolates

TST

Frequency

Allelic profile

fimH

sseL

CRISPR1

CRISPR2a

TST 9

5

6

15

129

159*

TST 10

16

8

15

11

160

TST 11

2

6

15

10

163*

TST 12

7

6

15

10

164*

TST 13

6

6

15

129

162

TST 14

1

6

15

129

165

TST 15

4

8

15

11

161

TST 16

1

8

61

11

160

TST 17

6

6

15

10

167*

TST 18

1

8

20

131

160

TST 19

6

6

62

10

164*

TST 20

5

49

15

129

162

TST 21

1

6

15

132

164*

TST 22

1

6

15

10

168*

TST 23

1

8

20

11

160

TST 24

1

6

15

133

167*

TST 25

1

50

20

134

169*

TST 26

1

6

15

10

170*

TST 27

1

6

15

10

171*

TST 28

1

6

15

10

172*

TST 29

1

8

62

11

160

TST 30

1

6

15

137

174

TST 31

1

8

15

11

175

TST 32

1

6

15

135

162

TST 33

1

6

15

138

177*

TST 34

1

8

15

139

161

TST 35

1

6

15

140

178*

TST 36

1

8

63

11

160

TST 37

1

6

15

141

162

TST 38

1

6

15

10

179*

TST 39

1

6

15

10

180*

TST 40

1

6

15

142

173*

TST 41

1

8

20

143

166

TST 42

2

6

15

10

181**

TST 56

1

6

15

130

173*

TST 57

1

6

15

10

205**

TST 58

1

6

15

136

164*

TST 59

-

6

62

10

207*

TST 60

-

6

15

166

208*

  1. The numbers represent the allelic identifier for the individual CRISPR-MVLST markers. The combination of four specific alleles defines a given HST. The frequency is the number of times a particular TST was observed among the 86 S. Typhimurium isolates analyzed in the first study and does not include the frequency of TSTs that were seen in the outbreak study. All TSTs identified here were new and not seen in previous studies. aSome CRISPR2 alleles required more than two sequencing primers to cover the whole length of the array. Alleles that required three primers are noted with * and the two isolates that required seven primers to sequence CRISPR2 are noted with **. The position of these primers is shown in Additional file 1.