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Table 1 Summary of RNA-sequencing

From: Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses

Sample Run F16 F26 F36 O26
C-source, cultivation time   Fructose, 16 h Fructose, 26 h Fructose, 36 h Octanoate, 26 h
Cellular phase   Growth PHA production Stationary PHA production
Number of reads 1 38,214,032 39,930,488 33,340,159 26,442,674
  2 41,400,577 40,262,640 28,544,022 40,339,722
Reads on rRNA regionsa 1 27,521,315 34,573,643 27,787,869 23,463,979
  2 30,737,637 34,721,392 23,478,331 35,483,825
Reads on CDSs other than rRNA regionsa (Total reads) 1 10,692,717 5,356,845 5,552,290 2,978,695
  2 10,662,940 5,541,248 5,065,691 4,855,897
  1. aH16_A1659-A1661 (rrsA-rrlA-rrfA), H16_A3306-A3302 (rrsB-tRNA[Ile]-tRNA[Ala]-rrlB-rrfB), and H16_A3513-A3509 (rrsC-tRNA[Ile]-tRNA[Ala]-rrlC-rrfC) on chromosome 1, and H16_B0151-B0155 (rrsD-tRNA[Ile]-tRNA[Ala]-rrlD-rrfD) and H16_B0769-B0773 (rrsE-tRNA[Ile]-tRNA[Ala]-rrlE-rrfE) on chromosome 2.