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Table 1 Contig assembly and open reading frame (ORF) prediction of Illumina reads (51 bp) from human milk

From: Human milk metagenome: a functional capacity analysis

Sequenced reads (51 bp)

261, 532, 204

Matching human

186,010,988

Matching prokaryotic

1,331,996

Used in contig assembly1

32,991,450

Contigs

56, 712

Post quality control

53,785

Average length (bp)

160 ± 55

Total length (bp)

8,630,997

Predicted ORFs

41, 352

Annotated

33,793

rRNAs

103

Functional category

30,128

Unrecognized

7,559

  1. 1 all sequences not matching the human genome (≤10 bp mismatch).
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BMC Microbiology

ISSN: 1471-2180

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