Table 4 Summary of Tandem Repeats Finder (TRF) analysis.
From: Tandem repeat markers as novel diagnostic tools for high resolution fingerprinting of Wolbachia
Strain | genome size | TR | TR size in total (% genome) | mean TR period size (range) | mean number of repeats/TR (range) | mean TR internal match (%) |
|---|---|---|---|---|---|---|
w Mel | 1,267,812bp | 93 | 20,349bp (1.6%) | 80.9bp (10-291) | 2.7 (1.8-11.8) | 88.3 |
w Ri | 1,445,904bp | 94 | 16,667bp (1.1%) | 58.5bp (10-378) | 2.8 (1.8-8.8) | 87.5 |
w Pip | 1,482,530bp | 72 | 13,268bp (0.9%) | 68.5bp (12-399) | 2.8 (1.8-10.6) | 87.9 |
w Bm | 1,080,114bp | 11 | 1,032bp (0.1%) | 42.8bp (3-112) | 3.3 (1.9-15.7) | 89.0 |
A. m. | 1,197,687bp | 54 | 8,541bp (0.7%) | 64.4bp (11-495) | 2.8 (1.9-11.2) | 91.1 |
E. r. | 1,516,355bp | 201 | 95,290bp (6.3%) | 138.7bp (1-471) | 4.8 (1.8-65.1) | 91.6 |
N. r. | 879,977bp | 27 | 5,569bp (0.6%) | 68.8bp (9-297) | 2.9 (1.9-4.9) | 88.4 |
E. coli | 4,649,675bp | 89 | 17,807bp (0.38%) | 70.4bp (8-304) | 3.1 (1.9-12.5) | 90.1 |