Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare

Chevalier, Frédéric; Herbinière-Gaboreau, Juline; Charif, Delphine; Mitta, Guillaume; Gavory, Frédéric; Wincker, Patrick; Grève, Pierre; Braquart-Varnier, Christine; Bouchon, Didier

doi:10.1186/1471-2180-12-S1-S1

Table 3 List of immune genes identified in the libraries.

From: Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare

												Library	occurrences
	Biological function	Gene	BLAST program	Accession	Description	Species	e-value	Query coverage	Max identity	SSH-C	SSH-NC	SSH-S	SSH-A	SO	AO	N
Pathogen detection	Recognition	C-type lectin 1	blastx	ABA54612.1	C-type lectin 1	Fenneropenaeus chinensis	5E-03	0.44	0.21							x
			tblastx	DQ871245.1	C-type lectin	Litopenaeus vannamei	8E-09	0.27	0.48
		C-type lectin 2	blastx	ACR56805.1	C-type lectin	Fenneropenaeus merguiensis	1E-08	0.39	0.30				x	x		x
			tblastx	CP000576.1	Prochlorococcus marinus str. MIT 9301	Prochlorococcus marinus	9E-05	0.12	0.50
		C-type lectin 3	blastx	ACC86854.1	C-type lectin-like domain-containing protein PtLP	Portunus trituberculatus	1E-09	0.74	0.27							x
			tblastx	EU477491.1	C-type lectin-like domain-containing protein PtLP	Portunus trituberculatus	4E-14	0.56	0.65
		Peroxinectin-like A	blastx	XP_002435528.1	Peroxinectin. putative	Ixodes scapularis	8E-27	0.85	0.32	x						x
			tblastx	XM_002406272.1	Peroxinectin. putative	Ixodes scapularis	1E-41	0.76	0.36
		Peroxinectin-like B	blastx	XP_002406316.1	Peroxinectin. putative	Ixodes scapularis	7E-23	0.70	0.38	x
			tblastx	EU934306.1	TSA: AD-573 salivary peroxidase	Anopheles darlingi	6E-23	0.52	0.48
	Transduction	ECSIT	blastx	BAI40012.1	Evolutionarily Conserved Signaling Intermediate in Toll pathways	Marsupenaeus japonicus	5E-43	0.58	0.59							x
			tblastx	AB491495.1	Evolutionarily Conserved Signaling Intermediate in Toll pathways	Marsupenaeus japonicus	3E-51	0.63	0.60
		MyD88-like	blastx	XP_001658635.1	Myd88	Aedes aegypti	4E-08	0.50	0.29							x
			tblastx	XM_001658585.1	Myd88	Aedes aegypti	4E-07	0.41	0.27
		SOCS2-like	blastx	BAI70368.1	suppressor of cytokine signaling-2 like	Marsupenaeus japonicus	9E-35	0.81	0.47							x
			tblastx	AB516427.1	suppressor of cytokine signaling-2 like	Marsupenaeus japonicus	2E-34	0.74	0.50
Immune response	AMP	ALF 1	blastx	ABP73291.1	anti-lipopolysaccharide factor isoform 2	Penaeus monodon	2E-26	0.39	0.59							x
			tblastx	AB453738.1	MjALF2	Marsupenaeus japonicus	8E-30	0.40	0.58
		ALF 2	blastx	BAH22585.1	anti-lipopolysaccharide factor 2	Marsupenaeus japonicus	2E-05	0.68	0.28	x
			tblastx	AB453738.1	MjALF2	Marsupenaeus japonicus	8E-19	0.79	0.40
		Crustin 1	blastx	ACU25385.1	Crustin 4	Panulirus japonicus	5E-22	0.43	0.55							x
			tblastx	FJ797417.1	Crustin 1 (PJC1)	Panulirus japonicus	7E-24	0.47	0.58
		Crustin 2	blastx	ACU25385.1	Crustin 4	Panulirus japonicus	1E-10	0.44	0.48							x
			tblastx	FJ797420.1	Crustin 1 (PJC1)	Panulirus japonicus	7E-34	0.35	0.66
		Crustin 3	blastx	ACU25382.1	Crustin 1	Panulirus japonicus	2E-28	0.35	0.65							x
			tblastx	FJ797417.1	Crustin 1 (PJC1)	Panulirus japonicus	6E-34	0.44	0.53
		I-type lysozyme	blastx	ACZ63472.1	i-type lysozyme-like protein 2	Penaeus monodon	7E-41	0.70	0.67							x
			tblastx	GQ478704.1	i-type lysozyme-like protein 2	Penaeus monodon	1E-42	0.57	0.62
	Serine proteases	Masquerade-like A	blastx	ABY64694.1	Masquerade-like protein	Armadillidium vulgare	2E-112	0.50	0.99	x						x
			tblastx	EU216755.1	Masquerade-like protein	Armadillidium vulgare	5E-134	0.50	0.99
		Masquerade-like B	blastx	CAA72032.2	Masquerade-like protein	Pacifastacus leniusculus	2E-86	0.67	0.47	x					x	x
			tblastx	EU216755.1	Armadillidium vulgare masquerade-like protein	Armadillidium vulgare	1E-97	0.37	0.75
	Serine protease inhibitors	a2-macroglobulin A	blastx	ABY64692.1	alpha-2-macroglobulin	Armadillidium vulgare	1E-119	0.99	1.00	x						x
			tblastx	EU216753.1	alpha-2-macroglobulin	Armadillidium vulgare	6E-152	1.00	1.00
		a2-macroglobulin B	blastx	AAX24130.1	alpha-2-macroglobulin	Penaeus monodon	2E-06	0.28	0.54							x
			tblastx	DQ988330.2	alpha 2 macroglobulin	Litopenaeus vannamei	2E-81	0.54	0.57
		a2-macroglobulin C	blastx	ABI79454.2	alpha 2 macroglobulin	Litopenaeus vannamei	6E-27	0.38	0.51					x
			tblastx	AY826818.1	alpha-2-macroglobulin	Penaeus monodon	1E-12	0.35	0.52
		a2-macroglobulin D	blastx	BAC99073.1	alpha2-macroglobulin	Marsupenaeus japonicus	1E-10	0.84	0.26							x
			tblastx	EF073268.2	alpha-2-macroglobulin	Litopenaeus vannamei	4E-35	0.36	0.44
		a2-macroglobulin E	blastx	ABK60046.1	alpha-2-macroglobulin	Macrobrachium rosenbergii	5E-43	0.98	0.42	x
			tblastx	EF073269.1	alpha-2-macroglobulin	Macrobrachium rosenbergii	6E-64	0.97	0.48
	Regulation of granular secretion	Cyclophylin G	blastx	ADD18906.1	peptidyl-prolyl cis-trans isomerase	Glossina morsitans morsitans	1E-62	0.72	0.71				x
			tblastx	EZ543483.1	TSA: Crepidula fornicata 3374.Cfedg	Crepidula fornicata	7E-74	0.67	0.70
	RNAi	Piwi	blastx	XP_002155913.1	PREDICTED: similar to Cniwi	Hydra magnipapillata	2E-93	0.73	0.51		x				x	x
			tblastx	XM_002155877.1	PREDICTED: similar to Cniwi (LOC100201838)	Hydra magnipapillata	4E-105	0.73	0.64
		Argonaute-like	blastx	NP_001181904.1	argonaute-2	Sus scrofa	6E-55	0.97	0.50				x
			tblastx	XM_001638444.1	predicted protein (NEMVEDRAFT_v1g180719)	Nematostella vectensis	3E-56	0.84	0.47
	Stress response	Ferritin A	blastx	ABY75225.1	Ferritin	Macrobrachium rosenbergii	4E-67	0.47	0.74	x				x	x	x
			tblastx	EU371046.1	Ferritin	Macrobrachium rosenbergii	4E-80	0.48	0.75
		Ferritin B	blastx	ABY75225.1	Ferritin	Macrobrachium rosenbergii	2E-50	0.66	0.57						x	x
			tblastx	EU371046.1	Ferritin	Macrobrachium rosenbergii	2E-59	0.77	0.58
		Ferritin C	blastx	ABY75225.1	Ferritin	Macrobrachium rosenbergii	3E-58	0.72	0.69							x
			tblastx	EU371046.1	Ferritin	Macrobrachium rosenbergii	4E-68	0.74	0.80
		BIP2	blastx	XP_001687763.1	AGAP000189-PA [Anopheles gambiae str. PEST]	Anopheles gambiae	7E-52	0.60	0.46						x	x
			tblastx	XM_002428865.1	conserved hypothetical protein	Pediculus humanus	1E-59	0.51	0.57
	Detoxification	Peroxiredoxin A	blastx	ACS91344.1	Peroxiredoxin	Fenneropenaeus indicus	3E-56	0.81	0.56					x		x
			tblastx	GQ161914.1	Peroxiredoxin	Fenneropenaeus indicus	1E-117	0.82	0.85
		Peroxiredoxin B	blastx	ACF35639.1	Peroxiredoxin 6	Eriocheir sinensis	1E-79	0.68	0.63					x		x
			tblastx	EU626070.1	Peroxiredoxin 6		4E-95	0.68	0.65
		Peroxiredoxin C	blastx	AAP93584.1	thioredoxin peroxidase	Apis mellifera ligustica	8E-78	0.76	0.78						x
			tblastx	NM_001030437.1	Peroxiredoxin	Xenopus tropicalis	4E-92	0.77	0.76
		Peroxiredoxin-like D	blastx	XP_970660.2	PREDICTED: similar to 1-Cys peroxiredoxin	Tribolium castaneum	5E-07	0.51	0.70					x
			tblastx	XM_965567.2	PREDICTED: similar to 1-Cys peroxiredoxin	Tribolium castaneum	1E-09	0.59	0.66
		Thioredoxin A	blastx	XP_001608075.1	Thioredoxin-like protein	Nasonia vitripennis	2E-73	0.88	0.60						x	x
			tblastx	XM_001608025.1	Thioredoxin-like protein	Nasonia vitripennis	2E-84	0.88	0.64
		Thioredoxin B	blastx	XP_973267.1	PREDICTED similar to Thioredoxin domain-containing protein 14 homolog (LOC662051)	Tribolium castaneum	4E-58	0.96	0.53						x	x
			tblastx	XM_968174.1	PREDICTED similar to Thioredoxin domain-containing protein 14 homolog (LOC662051)	Tribolium castaneum	3E-63	0.91	0.60
		Glutathione peroxidase	blastx	AAY66814.1	selenium dependent salivary glutathione peroxidase	Ixodes scapularis	3E-39	0.95	0.43							x
			tblastx	EU399681.1	Glutathione peroxidase	Metapenaeus ensis	5E-36	0.71	0.57
		Cu/Zn SOD	blastx	ABU55006.1	Copper/zinc superoxide dismutase	Macrobrachium rosenbergii	1E-30	0.43	0.47	x						x
			tblastx	EU077527.1	Copper/zinc superoxide dismutase	Macrobrachium rosenbergii	9E-32	0.31	0.71
		cytMnSOD	blastx	CAR85669.1	cytoplasmic manganese superoxide dismutase	Cyanagraea praedator	2E-102	0.68	0.66	x				x		x
			tblastx	FM242568.1	cytoplasmic manganese superoxide dismutase	Cyanagraea praedator	8E-116	0.68	0.73
	Coagulation	Transglutaminase B	blastx	AAK69205.1	Transglutaminase	Pacifastacus leniusculus	3E-70	0.78	0.54	x						x
			tblastx	AF336805.1	Transglutaminase	Pacifastacus leniusculus	8E-84	0.78	0.60
	Cellular differentiation	Astakine	blastx	ACI02322.1	astakine variant 2	Penaeus monodon	3E-11	0.64	0.52							x
			tblastx	EU980445.1	astakine variant 2	Penaeus monodon	7E-15	0.72	0.49
		Runt	blastx	CAD44571.1	runt protein 1b	Pacifastacus leniusculus	2E-45	0.67	0.65						x
			tblastx	AJ506096.1	Pacifastacus leniusculus mRNA for runt protein	Pacifastacus leniusculus	8E-73	0.65	0.82
	Apoptosis	AIF-like	blastx	NP_001121885.1	apoptosis-inducing factor	Danio rerio	7E-28	0.54	0.43							x
			tblastx	NM_001128413.1	apoptosis-inducing factor	Danio rerio	9E-30	0.52	0.49
	Autophagy	ATG7	blastx	XP_002600056.1	hypothetical protein BRAFLDRAFT_79689	Branchiostoma floridae	2E-40	0.88	0.52				x
			tblastx	NM_001129922.1	ATG7 autophagy related 7 homolog	Xenopus tropicalis	5E-40	0.68	0.61
		ATG12	blastx	ADO32996.1	Autophagy-like protein ATG12	Biston betularia	3E-33	0.50	0.52				x
			tblastx	HM449861.1	Autophagy-like protein ATG12	Biston betularia	1E-38	0.47	0.53
Other	Cytoskeleton	Kinesin	blastx	NP_999817.1	kinesin II	Strongylocentrotus purpuratus	3E-159	0.81	0.83					x		x
			tblastx	NM_214652.1	kinesin II	Strongylocentrotus purpuratus	0.0	0.82	84.00

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