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Table 4 Summary of the optimisation procedure for resolution (res) and congruence (inc) in the Francisella genus where the consensus set of markers are highlighted according to how often they are selected in the optimal partitions of markers; position 1 corresponds to the most represented marker

From: Increased knowledge of Francisellagenus diversity highlights the benefits of optimised DNA-based assays

 

Position

1

2

3

4

5

6

7

No of markers

Metric

       

2

res

08-fabH

35-tpiA

     
 

inc

08-fabH

35-tpiA

     

3

res

08-fabH

35-tpiA

24-lpnB

    
 

inc

08-fabH

35-tpiA

02-16 s

    

4

res

08-fabH

35-tpiA

24-lpnB

27-parC

   
 

inc

35-tpiA

08-fabH

01-16S

02-16 s

   

5

res

08-fabH

35-tpiA

24-lpnB

27-parC

22-lpnA

  
 

inc

35-tpiA

08-fabH

24-lpnB

27-parC

33-rpoB

  

6

res

08-fabH

24-lpnB

35-tpiA

27-parC

22-lpnA

25-mdh

 
 

inc

35-tpiA

08-fabH

24-lpnB

04-16 s

01-16S

33-rpoB

 

7

res

08-fabH

35-tpiA

24-lpnB

26-mutS

27-parC

18-groEL

22-lpnA

 

inc

35-tpiA

08-fabH

01-16S

04-16 s

24-lpnB

27-parC

25-mdh

  1. Markers 02-16 s + ItS + 23 s and 04-16 s + ItS + 23 s are abbreviated as 02-16 s and 04-16 s, respectively.