Skip to main content

Advertisement

Table 1 Taxonomic characterization of tonsillar microbial communities

From: Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs

  Sample # Readsa Phylumb Classb Orderb Familyb Genusb
Herd 2 Tissue 99894 95.6% 95.4% 94.8% 82.7% 64.7%
Herd 1 Time 1 Tissue 54932 99.7% 99.6% 99.1% 96.7% 85.0%
Herd 1 Time 2 Tissue 15929 99.8% 99.5% 99.4% 98.7% 70.1%
Herd 1 Time 2 Brush 39678 99.9% 99.5% 99.5% 98.6% 75.0%
Total # reads   210433 205795 205346 204467 190540 152192
Avg % Assigned    97.8% 97.6% 97.2% 90.5% 72.3%
  1. a the sum of all sequences of 4 individuals
  2. b% of reads taxonomically assigned at each level