Table 1 Taxonomic characterization of tonsillar microbial communities
From: Defining the "core microbiome" of the microbial communities in the tonsils of healthy pigs
| Â | Sample | # Readsa | Phylumb | Classb | Orderb | Familyb | Genusb |
|---|---|---|---|---|---|---|---|
Herd 2 | Tissue | 99894 | 95.6% | 95.4% | 94.8% | 82.7% | 64.7% |
Herd 1 Time 1 | Tissue | 54932 | 99.7% | 99.6% | 99.1% | 96.7% | 85.0% |
Herd 1 Time 2 | Tissue | 15929 | 99.8% | 99.5% | 99.4% | 98.7% | 70.1% |
Herd 1 Time 2 | Brush | 39678 | 99.9% | 99.5% | 99.5% | 98.6% | 75.0% |
Total # reads | Â | 210433 | 205795 | 205346 | 204467 | 190540 | 152192 |
Avg % Assigned | Â | Â | 97.8% | 97.6% | 97.2% | 90.5% | 72.3% |