Table 1 List of domains found in the genomes of K. pneumoniae 342, MGH 78578 and NTUH-K2044
From: Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae
K. pneumoniae 342 | K. pneumoniae MGH 78578 | K. pneumoniae NTUH-K2044 | Total Predicted DGC | Total Predicted PDE | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
GGDEF | GGDEF + EAL | EAL | GGDEF | GGDEF + EAL | EAL | GGDEF | GGDEF + EAL | EAL | |||
Total proteins | 15 | 6 | 15 | 13 | 5 | 15 | 12 | 5 | 10 | 56 | 56 |
Transmembrane segments | 11 | 5 | 6 | 9 | 4 | 7 | 8 | 4 | 6 | 41(73%) | 32 (57%) |
Signal peptides | 1 | 1 | 1 | 1 | 0 | 1 | 0 | 0 | 1 | 3 (5%) | 4 (7%) |
With GAF domain | 3 | 0 | 1 | 4 | 0 | 0 | 3 | 0 | 0 | 10 (18%) | 1 (2%) |
With HAMP domain | 2 | 1 | 0 | 2 | 1 | 0 | 1 | 1 | 0 | 8 (14%) | 3 (5%) |
With PAS domain | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 6 (11%) | 3 (5%) |
With BLUF domain | 0 | 0 | 3 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 7 (12%) |
With MASE domain | 2 | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 5 (9%) | 6 (11%) |
With CACHE domain | 1 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 5 (9%) | 0 |
With CHASE domain | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 (2%) | 1 (2%) |
With CSS-motif domain | 0 | 0 | 5 | 0 | 0 | 6 | 0 | 0 | 5 | 0 | 16 (28%) |
With sensor domains | 9 | 4 | 10 | 9 | 3 | 9 | 7 | 3 | 8 | 35 (62%) | 37 (66%) |
With allosteric I site | 7 | 0 | 0 | 7 | 0 | 0 | 5 | 0 | 0 | 19 (34%) | 0 |
With degenerate GGDEF | 1 | 3 | 0 | 1 | 3 | 0 | 0 | 3 | 0 | 11 (20%) | 9 (56%)* |
With degenerate EAL | 0 | 2 | 6 | 0 | 2 | 6 | 0 | 2 | 4 | 6 (38%)* | 22 (39%) |