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Table 1 List of domains found in the genomes of K. pneumoniae 342, MGH 78578 and NTUH-K2044

From: Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae

  K. pneumoniae 342 K. pneumoniae MGH 78578 K. pneumoniae NTUH-K2044 Total Predicted DGC Total Predicted PDE
  GGDEF GGDEF + EAL EAL GGDEF GGDEF + EAL EAL GGDEF GGDEF + EAL EAL   
Total proteins 15 6 15 13 5 15 12 5 10 56 56
Transmembrane segments 11 5 6 9 4 7 8 4 6 41(73%) 32 (57%)
Signal peptides 1 1 1 1 0 1 0 0 1 3 (5%) 4 (7%)
With GAF domain 3 0 1 4 0 0 3 0 0 10 (18%) 1 (2%)
With HAMP domain 2 1 0 2 1 0 1 1 0 8 (14%) 3 (5%)
With PAS domain 1 1 0 1 1 0 1 1 0 6 (11%) 3 (5%)
With BLUF domain 0 0 3 0 0 2 0 0 2 0 7 (12%)
With MASE domain 2 1 1 0 1 1 0 1 1 5 (9%) 6 (11%)
With CACHE domain 1 0 0 2 0 0 2 0 0 5 (9%) 0
With CHASE domain 0 1 0 0 0 0 0 0 0 1 (2%) 1 (2%)
With CSS-motif domain 0 0 5 0 0 6 0 0 5 0 16 (28%)
With sensor domains 9 4 10 9 3 9 7 3 8 35 (62%) 37 (66%)
With allosteric I site 7 0 0 7 0 0 5 0 0 19 (34%) 0
With degenerate GGDEF 1 3 0 1 3 0 0 3 0 11 (20%) 9 (56%)*
With degenerate EAL 0 2 6 0 2 6 0 2 4 6 (38%)* 22 (39%)
  1. *Average calculated based only on the number of hybrid proteins (16).
  2. Numbers in parenthesis indicate % of total for either DGCs or PDEs.