Table 1 OTU distribution of clones between individual alpaca animals
From: Molecular analysis of methanogenic archaea in the forestomach of the alpaca (Vicugna pacos)
OTU | Nearest Valid Taxa | % Seq. Identity | Alpaca 4 | Alpaca 5 | Alpaca 6 | Alpaca 8 | Alpaca 9 | Total Clones |
|---|---|---|---|---|---|---|---|---|
1 | Mbr. ruminantium | 98.8 | 29 | 22 | 13 | 54 | 21 | 139 |
2 | Mbr. millerae | 98.1 | 27 | 15 | 49 | 12 | 7 | 110 |
3 | Mbr. millerae | 98.3 | 20 | 35 | 26 | 19 | 9 | 109 |
4 | Mbr. millerae | 99.0 | 33 | 1 | 16 | 4 | 55 | 109 |
5 | Mbr. millerae | 98.5 | 16 | 13 | 21 | 17 | 15 | 82 |
6 | Mbr. gottschalkii | 97.8 | 2 | 35 | 13 | 5 | 2 | 57 |
7 | Mba. alcaliphilum | 96.8 | 8 | 21 | 6 | 7 | 13 | 55 |
8 | Mbr. millerae | 97.9 | 2 | 0 | 4 | 31 | 5 | 42 |
9 | Mbr. millerae | 97.9 | 10 | 4 | 4 | 11 | 2 | 31 |
10 | Mbr. millerae | 99.8 | 4 | 1 | 12 | 0 | 14 | 31 |
11 | Mbr. smithii | 98.1 | 5 | 9 | 3 | 4 | 4 | 25 |
12 | Mbr. millerae | 97.9 | 0 | 19 | 3 | 0 | 2 | 24 |
13 | Msp. stadtmanae | 96.4 | 3 | 3 | 0 | 2 | 9 | 17 |
14 | Mbr. smithii | 98.0 | 6 | 1 | 4 | 5 | 0 | 16 |
15 | Apr. boonei | 82.3 | 0 | 0 | 9 | 0 | 0 | 9 |
16 | Mbr. ruminantium | 96.4 | 3 | 2 | 1 | 0 | 1 | 7 |
17 | Mbr. millerae | 98.7 | 3 | 0 | 2 | 0 | 2 | 7 |
18 | Apr. boonei | 82.5 | 0 | 0 | 1 | 1 | 4 | 6 |
19 | Mba. alcaliphilum | 95.5 | 1 | 1 | 2 | 1 | 0 | 5 |
20 | Mba. alcaliphilum | 96.5 | 0 | 4 | 1 | 0 | 0 | 5 |
21 | Mbr. olleyae | 96.7 | 0 | 1 | 0 | 3 | 1 | 5 |
22 | Msp. stadtmanae | 96.5 | 0 | 0 | 1 | 4 | 0 | 5 |
23 | Mbr. millerae | 97.2 | 1 | 0 | 1 | 2 | 0 | 4 |
24 | Mba. alcaliphilum | 96.9 | 1 | 0 | 0 | 0 | 3 | 4 |
25 | Mbr. ruminantium | 98.4 | 0 | 1 | 1 | 0 | 1 | 3 |
26 | Mbr. ruminantium | 97.7 | 0 | 2 | 1 | 0 | 0 | 3 |
27 | Mbr. smithii | 97.3 | 0 | 1 | 1 | 1 | 0 | 3 |
28 | Apr. boonei | 82.6 | 0 | 0 | 2 | 1 | 0 | 3 |
29 | Mbr. millerae | 97.3 | 2 | 0 | 0 | 0 | 0 | 2 |
30 | Mbr. millerae | 97.8 | 2 | 0 | 0 | 0 | 0 | 2 |
31 | Apr. boonei | 81.6 | 0 | 2 | 0 | 0 | 0 | 2 |
32 | Mbr. ruminantium | 97.5 | 0 | 1 | 0 | 1 | 0 | 2 |
33 | Mbr. ruminantium | 97.2 | 0 | 1 | 0 | 0 | 1 | 2 |
34 | Mbr. ruminantium | 95.6 | 0 | 0 | 1 | 1 | 0 | 2 |
35 | Apr. boonei | 81.7 | 0 | 0 | 1 | 0 | 1 | 2 |
36 | Mbr. gottschalkii | 96.4 | 0 | 0 | 0 | 0 | 2 | 2 |
37 | Mbr. gottschalkii | 96.7 | 1 | 0 | 0 | 0 | 0 | 1 |
38 | Apr. boonei | 80.9 | 0 | 1 | 0 | 0 | 0 | 1 |
39 | Mbr. ruminantium | 96.4 | 0 | 1 | 0 | 0 | 0 | 1 |
40 | Mbr. ruminantium | 94.8 | 0 | 1 | 0 | 0 | 0 | 1 |
41 | Mbr. wolinii | 95.8 | 0 | 1 | 0 | 0 | 0 | 1 |
42 | Mbr. millerae | 97.2 | 0 | 0 | 1 | 0 | 0 | 1 |
43 | Mbr. ruminantium | 96.8 | 0 | 0 | 1 | 0 | 0 | 1 |
44 | Mbr. olleyae | 96.7 | 0 | 0 | 0 | 1 | 0 | 1 |
45 | Mbr. smithii | 97.5 | 0 | 0 | 0 | 1 | 0 | 1 |
46 | Mbr. millerae | 96.2 | 0 | 0 | 0 | 1 | 0 | 1 |
47 | Msp. stadtmanae | 95.7 | 0 | 0 | 0 | 0 | 1 | 1 |
48 | Apr. boonei | 81.7 | 0 | 0 | 0 | 0 | 1 | 1 |
49 | Mbr. millerae | 96.1 | 0 | 0 | 0 | 0 | 1 | 1 |
50 | Mbr. millerae | 97.3 | 0 | 0 | 0 | 0 | 1 | 1 |
51 | Mbr. millerae | 95.4 | 0 | 0 | 0 | 0 | 1 | 1 |
Total | Â | Â | 179 | 199 | 201 | 189 | 179 | 947 |