From: Analysis of the ArcA regulon in anaerobically grown Salmonella enterica sv. Typhimurium
Locusb | Namec | Primer sequenced | Fragment (bp)e | Serovar Typhimurium Gene Functionf | Ratio of arcAmutant/WT | Log2ratio | ||
---|---|---|---|---|---|---|---|---|
 |  |  |  |  | qRT-PCRg | Microarrayh | qRT-PCRi | Microarrayj |
STM3217 | aer | 5'-CGTACAACATCTTAATCGTAGC-3' 5'-TTCGTTCAGATCATTATTACCC-3' | 163 | aerotaxis sensor receptor, senses cellular redox state or proton motive force | 0.237 | 0.293 | -2.1 | -1.8 |
STM1919 | cheM | 5'-GCCAATTTCAAAAATATGACG-3' 5'-GTCCAGAAACTGAATAAGTTCG-3' | 114 | methyl accepting chemotaxis protein II, aspartate sensor-receptor | 0.194 | 0.261 | -2.4 | -1.9 |
STM0441 | cyoC | 5'-TATTTAGCTCCATTACCTACGG-3' 5'-GGAATTCATAGAGTTCCATCC-3' | 134 | cytochrome o ubiquinol oxidase subunit III | 4.920 | 5.465 | 2.3 | 2.5 |
STM1803 | dadA | 5'-TAACCTTTCGCTTTAATACTCC-3' 5'-GATATCAACAATGCCTTTAAGC-3' | 155 | D-amino acid dehydrogenase subunit | 3.430 | 10.520 | 1.8 | 3.4 |
STM2892 | invJ | 5'-TTGCTATCGTCTAAAAATAGGC-3' 5'-TTGATATTATCGTCAGAGATTCC-3' | 128 | surface presentation of antigens; secretory proteins | 0.855 | 1.010 | -0.2 | 0.0 |
STM2324 | nuoF | 5'-GGATATCGAGACACTTGAGC-3' 5'-GATTAAATGGGTATTACTGAACG-3' | 163 | NADH dehydrogenase I chain F | 0.380 | 1.706 | -1.4 | 0.8 |
STM0650 | STM0650 | 5'-CAACAGCTTATTGATTTAGTGG-3' 5'-CTAACGATTTTTCTTCAATGG-3' | 130 | putative hydrolase C-terminus | 0.274 | 0.123 | -1.9 | -3.0 |
STM2787 | STM2787 | 5'-AAGCGAATACAGCTATGAACC-3' 5'-ATTAGCTTTTGCAGAACATGG-3' | 144 | tricarboxylic transport | 6.440 | 90.770 | 2.7 | 6.5 |
STM4463 | STM4463 | 5'-AAGGTATCAGCCAGTCTACG-3' 5'-CGTATGGATAAGGATAAATTCG-3' | 142 | putative arginine repressor | 0.165 | 0.012 | -2.6 | -6.4 |
STM2464 | eutN | 5'-AGGACAAATCGTATGTACCG-3' 5'-ACCAGCAGTACCCACTCTCC-3' | 153 | putative detox protein in ethanolamine utilization | 0.181 | 0.159 | -2.5 | -2.7 |
STM2454 | eutR | 5'-GGTAAAAGAGCAGCATAAAGC-3' 5'-ATTATCACTCAAGACCTTACGC-3' | 118 | putative regulator ethanolamine operon (AraC/XylS family) | 0.189 | 0.188 | -2.4 | -2.4 |
STM2470 | eutS | 5'-AATAAAGAACGCATTATTCAGG-3' 5'-GTTAAAGTCATAATGCCAATCG-3' | 137 | putative carboxysome structural protein, ethanol utilization | 0.197 | 0.105 | -2.3 | -3.3 |
STM1172 | flgM | 5'-AGCGACATTAATATGGAACG-3' 5'-TTTACTCTGTAAGTAGCTCTGC-3' | 126 | anti-FliA (anti-sigma) factor; also known as RflB protein | 0.196 | 0.163 | -2.4 | -2.6 |
STM3692 | lldP | 5'-TGATTAAACTCAAGCTGAAAGG-3' 5'-CCGAAATTTTATAGACAAAGACC-3' | 189 | LctP transporter, L-lactate permease | 5.950 | 12.780 | 2.6 | 3.7 |
STM3693 | lldR | 5'-GAACAGAATATCGTGCAACC-3' 5'-GAGTCTGATTTTCTCTTTGTCG-3' | 153 | putative transcriptional regulator for lct operon (GntR family) | 5.750 | 80.000 | 2.5 | 6.3 |
STM1923 | motA | 5'-GGTTATCGGTACAGTTTTCG-3' 5'-TAGATTTTGTGTATTTCGAACG-3' | 194 | proton conductor component of motor, torque generator | 0.282 | 0.253 | -1.8 | -2.0 |
STM4277 | nrfA | 5'-GACTAACTCTCTGTCGAAAACC-3' 5'-ATTTTATGGTCGGTGTAGAGC-3' | 159 | nitrite reductase periplasmic cytochrome c(552) | 0.314 | 0.285 | -1.7 | -1.8 |