Table 1 Genes tested in both computational and biochemical assays
From: Regulatory effects of cAMP receptor protein (CRP) on porin genes and its own gene in Yersinia pestis
Gene ID | Gene | Regulation | Computational matching of regulatory consensus | Position of DNA fragment used § | |||
|---|---|---|---|---|---|---|---|
|  |  |  | Position§ | Sequence | Score | LacZ | Footprinting |
YPO1222 | ompC | + | R-191...-169 | AAACAGTGAGTTATAGCACATAT | 12.3 | -379...+130 | -281...-26 |
YPO1411 | ompF | + | D-131...-109 | ACTTTGTGACTTAGATCGAATTT | 10.73 | -328...+143 | -237...-4 |
YPO2506 | ompX | - | D-156...-134 | AGTATGTGACCTCCATCACCCAA | 11.68 | -374...+123 | -321...+4 |
YPO0136 | ompR | NO | - | - | 0 | -409...+83 | -409...+83 |
YPO0175 | crp | NO | R+235...+257 | GAACTCTGAGCCCTGTTAAGTTA | 1.44 | -147...+344 | -147...+344 |