Table 1 General features of putative ORFs from pKP1 with best matches to sequences in the public database
Protein or gene | Position | Size (nc/aa) | Proposed function | Source strain | % of identity (nc/aa) | GenBank accession no. (nc/aa) |
|---|---|---|---|---|---|---|
RepB | 600-1760 | 1161/386 | replication protein | Lactococcus lactis plasmid pSRQ900 | 99/99 | AF001314.1/NP_862549.1 |
RepX | 1757-2344 | 588/195 | replication associated protein | Lactococcus lactis plasmid pSRQ900 | 100/100 | AF001314.2/NP_862550.1 |
HsdS | 2320-3510 | 1191/396 | LldI type R/M, specificity subunit (HsdS) | Lactococcus lactis plasmid pSRQ900 | 100/100 | AF001314.2/NP_862551.1 |
pcp | 3821-4468 | 648/215 | pyrrolidone-carboxylate peptidase | Lactococcus lactis plasmid pSK11P | 99/99 | DQ149245.1/ABA43397.1 |
mbpL | 5022-8018 | 2997/998 | mucin-binding domain protein | Leuconostoc citreum KM20 plasmid pLCK1/Enterococcus faecalis TX1322 | 84/53 | DQ489740.1/ZP_04433966.1 |
Tnp | 9170-8484 | 687/228 | IS1216 transposase | Enterococcus faecalis strain EF-01 plasmid pEF-01/Enterococcus faecalis | 99/99 | CP002208.2/YP003896017.1 |
aggL | 9526-14829 | 5304/1767 | lactococcal aggregation factor | No similarity/Oenococcus oeni AWRIB429. | -/51 | -/ZP06554154.1 |