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Table 1 General features of putative ORFs from pKP1 with best matches to sequences in the public database

From: Cloning and expression of a novel lactococcal aggregation factor from Lactococcus lactis subsp. lactis BGKP1

Protein or gene Position Size (nc/aa) Proposed function Source strain % of identity (nc/aa) GenBank accession no. (nc/aa)
RepB 600-1760 1161/386 replication protein Lactococcus lactis plasmid pSRQ900 99/99 AF001314.1/NP_862549.1
RepX 1757-2344 588/195 replication associated protein Lactococcus lactis plasmid pSRQ900 100/100 AF001314.2/NP_862550.1
HsdS 2320-3510 1191/396 LldI type R/M, specificity subunit (HsdS) Lactococcus lactis plasmid pSRQ900 100/100 AF001314.2/NP_862551.1
pcp 3821-4468 648/215 pyrrolidone-carboxylate peptidase Lactococcus lactis plasmid pSK11P 99/99 DQ149245.1/ABA43397.1
mbpL 5022-8018 2997/998 mucin-binding domain protein Leuconostoc citreum KM20 plasmid pLCK1/Enterococcus faecalis TX1322 84/53 DQ489740.1/ZP_04433966.1
Tnp 9170-8484 687/228 IS1216 transposase Enterococcus faecalis strain
EF-01 plasmid pEF-01/Enterococcus faecalis
99/99 CP002208.2/YP003896017.1
aggL 9526-14829 5304/1767 lactococcal aggregation factor No similarity/Oenococcus oeni AWRIB429. -/51 -/ZP06554154.1
  1. nc - nucleotide
  2. aa - amino acid