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Table 1 Taxonomic identification and phylogenetic affiliation of the excised and sequenced epiphytic (EP), washing water (WW) and cultivation water (CW) DGGE bands

From: Life without a cell membrane: Challenging the specificity of bacterial endophytes within Bryopsis (Bryopsidales, Chlorophyta)

DGGE band number Closest matching strain in BLAST (accession number)
Query coverage/Maximum identity
Phylogenetic affiliation Correlation
MX19 EP 1 Uncultured Mycoplasma sp. clone MX19.9 (JF521606) 100/100 Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae M1m + M1b -
MX19 EP 2 Uncultured bacterium clone Del10081H12 (JF262029) 100/100 Proteobacteria; Alphaproteobacteria; Caulobacterales; Hyphomonadaceae M4 -
MX19 EP 3 Uncultured Phyllobacteriaceae bacterium clone MX19.12 (JF521607) 100/100 Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae M8 +
MX19 EP 4 Uncultured bacterium isolate TTGE gel band N68 (JN185170) 100/100 Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae M9 -
MX19 EP 5 Uncultured Labrenzia sp. clone DGGE band C (HE599215) 100/100 Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae M10 +
MX90 EP 6 Uncultured bacterium clone CD02003D03 (HM768522) 100/96 Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae M5 -
MX90 EP 7 Uncultured Phyllobacteriaceae bacterium clone MX19.12 (JF521607) 100/100 Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae M8 +
MX90 EP 8 Uncultured alphaproteobacterium clone TH_d327 (EU272970) 100/98 Proteobacteria; Alphaproteobacteria; Rhizobiales, Hyphomicrobiaceae M9 -
MX90 WW 9 Uncultured bacterium clone OTU017 (GU174663) 100/100 Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae M2 -
MX164 EP 10 Uncultured Mycoplasma sp. clone MX19.9 (JF521606) 100/96 Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae M1m + M1b -
MX164 EP 11 Uncultured Arcobacter sp. clone MX164.20 (JF521610) 100/100 Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae M2 +
MX164 EP 12 Uncultured proteobacterium clone Marsh_0_33 (JF980756) 100/100 Proteobacteria; Alphaproteobacteria; Caulobacterales; Hyphomonadaceae M3 -
MX164 EP 13 Acanthopleuribacter pedis type strain NBRC 101209 (AB303221) 100/93 Acidobacteria; Holophagae; Acanthopleuribacterales M5 -
MX164 EP 14 Hyphomicrobiaceae bacterium WPS10 (HQ638980) 100/98 Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae M8 -
MX164 EP 15 Uncultured bacterium clone I3A_12H (EU352599) 100/98 Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae M9 -
MX164 EP 16 Stappia sp. enrichment culture clone NKiNSO2 (EU983274) 100/95 Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae M10 -
MX164 WW 17 Uncultured Sneathiella sp. clone w-G7 (HQ727092) 100/97 Proteobacteria; Alphaproteobacteria; Sneathiellales; Sneathiellaceae M7 -
MX263 EP 18 Thalassomonas sp. UST061013-012 (EF587959) 100/100 Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae M7 -
MX263 EP 19 Uncultured Phyllobacteriaceae bacterium clone MX19.12 (JF521607) 100/100 Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae M8 +
MX263 EP 20 Uncultured Labrenzia sp. clone DGGE band C (HE599215) 100/100 Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae M10 +
MX263 WW 21 Uncultured Mycoplasma sp. clone MX263.1 (JF521605) 100/100 Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae M1m + M1b -
MX263 CW 22 Uncultured bacterium isolate DGGE gel band B12 (HQ875697) 100/93 Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae M3 -
MX263 CW 23 Alcanivorax dieselolei strain PM07 (HM596594) 100/100 Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae M6 -
MX344 EP 24 Uncultured Labrenzia sp. clone DGGE band C (HE599215) 100/100 Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae M10 +
MX344 WW 25 Ruegeria mobilis strain F4122 (HQ338148) 100/99 Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae M8 -
MX344 CW 26 Uncultured bacterium clone EMar8 (FR667032) 100/94 Proteobacteria; Gammaproteobacteria; Alteromonadales M4 -
MX344 CW 27 Uncultured bacterium clone W2-97 (HQ322761) 100/90 Proteobacteria; Alphaproteobacteria M7 -
  1. The band numbers correspond to the numbers (1-27) in Figure 4. The last column shows the correlation (positive + or negative -) between the identification of a band and the sequence information of the marker band (M1m, M1b, M2-M10) at the same position.