Table 5 SNP and antibiotic resistance gene profiles of E. faecium isolates and their corresponding Sequence types (STs)

AAACTTTC

1

3

No antibiotic resistance detected

ST 544, ST 583

AACCCTTC ^a

2

1

Amp ^R [pbp5]^m; Tet ^R [tetM]

ST 602 ^N

AACCCTTC ^a

2

3

Cip ^IR [gyrA]

AACCCTTC ^a

2

2

No antibiotic resistance detected

AATCCTTC

3

1

Gen ^IR [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST8, ST9, ST58, ST134, ST194, ST198, ST237, ST244, ST248,

AATCCTTC

3

2

No antibiotic resistance detected

ST259, ST266, ST298, ST309, ST370, ST402, ST425,

AATCTTTC

4

1

No antibiotic resistance detected

ST40, ST100, ST163, ST211, ST221, ST223, ST226,

AGCCCCTC

5

1

Gen ^IR [aac(6')-aph(2')]

ST 607 ^N

AGCCCTCT

6

1

No antibiotic resistance detected

ST508

AGCCCTTT

7

2

Cip ^IR [gyrA]

ST 603 ^N

AGCCCTTT

7

1

No antibiotic resistance detected

AGCCTTTC

8

2

No antibiotic resistance detected

ST 604 ^N

AGCTCTCC

9

2

Gen ^IR [aac(6')-aph(2')];Cip ^R [gyrA]^m;Amp ^R [pbp5]^m

ST260, ST262, ST273, ST322

AGTCCTTC

10

2

Gen ^IR [aac(6')-aph(2')]; Cip ^R [gyrA]^m

ST13, ST14, ST48, ST79, ST82, ST120, ST157, ST195, ST200, ST241

Tet ^R [tetL & S]

ST242, ST310, ST311,

AGTCCTTT

11

1

Gen ^IR [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST15, ST70

AGTCTTTT

12

2

Cip ^IR [gyrA]

ST 605 ^N

GACCCTCC

13

1

Gen ^IR [aac(6')-aph(2')]

ST 608 ^N

GACCCTCC

13

1

Cip ^IR [gyrA]

GACCCTTT

14

1

Cip ^IR [gyrA]; Tet ^R [tetL & M]

ST 609 ^N

GACCCTTT

14

2

Tet ^R [tetL,M & S]

GATCCTTC

15

1

Gen ^IR [aac(6')-aph(2')]

ST 610 ^N

GGCCCCCC

16

2

Cip ^IR [gyrA]

ST501, ST511, ST516, ST518, ST521, ST522, ST529, ST530, ST565, ST588, ST592, ST599

GGCCCTCC

17

3

Amp ^R [pbp5]^m; Tet ^IR [tetL & tetM]

ST162

GGCCCTTC

18

2

Cip ^IR [gyrA]

ST 611 ^N

GGCCTCCC

19

1

No antibiotic resistance detected

ST 606 ^N

GGTCCCCC

20

2

Cip ^IR [gyrA]

ST22, ST23, ST24, ST27, ST28, ST33, ST36, ST55, ST59, ST106,

ST111, ST119, ST122, ST131, ST136, ST159, ST214, ST263, ST269,

ST270, ST315, ST372, ST379, ST422, ST435

GGTCCTCC

21

1

Cip ^R [gyrA]^m

ST1, ST2, ST3, ST4, ST32, ST34, ST35, ST41, ST43, ST72,

ST87, ST90, ST104, ST109, ST128, ST139, ST146, ST215, ST250, ST253

ST257, ST291, ST292, ST330, ST426, ST427,

GGTCCTTT

22

1

Cip ^IR [gyrA]

ST6, ST88, ST149, ST170, ST247, ST255, ST354

GGTCCTTC

23

2

No antibiotic resistance detected

ST7, ST21, ST25, ST26, ST29, ST37, ST57, ST66, ST68, ST83,

ST89,ST97,ST99,ST112,ST113,ST115,ST124, ST129, ST143, ST158,

ST160, ST176, ST183, ST210, ST236, ST243, ST245, ST246, ST251,

ST265, ST271, ST272, ST277, ST281, ST284, ST297, ST358, ST381,

ST384, ST395, ST401, ST418, ST433, ST437,