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Table 6 Detected SNPs present in all three samples

From: Transcriptomes of Frankia sp. strain CcI3 in growth transitions

Locus tag Annotation Position Reference1 Variants2 Amino Acid Change
Francci3_0398 putative DNA-binding protein 452 G G/A Arg -> Gln
Francci3_1612 NLP/P60 356 G G/A Arg -> Gln
   375 A A/C Gln -> His
Francci3_1959 Transposase, IS110 1109 G G/A Gly -> Asp
Francci3_2025 Transposase, IS4 81 G A/G -
   91 C C/T Arg -> Cys
   119 T T/C Val -> Ala
Francci3_2063 hypothetical 310 A A/C Met -> Leu
   313 C C/T Pro -> Ser
   333 C C/T -
   353 A A/G Glu -> Gly
Francci3_3047 Radical SAM 93 G G/C -
Francci3_3251 putative signal transduction histidine kinase 293 T C/T Val -> Ala
Francci3_3418 SsgA 165 C T/C -
Francci3_4082 dnaE 3579 T C/T -
   3601 G G/A Glu -> Lys
Francci3_4107 Integrase 135 C C/T -
Francci3_4124 Recombinase 162 T T/A -
   168 C T/C -
Francci3_4157 Hypothetical 36 C C/T -
   49 A A/G Ser -> Gly
  1. 1 The nucleotide present in the reference genome sequence of Frankia sp. CcI3.
  2. 2 The predicted allelic variants for the reference position nucleotide. The most common polymorphic nucleotide is listed first in the proportion.