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Table 4 Distribution of gene determinant among isolation sources
| Percentage of gene determinant presence (confidence interval at 95%) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sources | No. of isolates | DT104 16S-23S spacer | ssaQ | mgtC | spi4_D | sopB | spvC | SGI1 left junction | intI1 | bla TEM | sul1 |
| Pigs | 61 | 66 (52.31-77.27) | 100 (95.21-100) | 100 (95.21-100) | 98 (91.2-99.96) | 100 (95.21-100) | 89 (77.78-95.26) | 67 (54-78.69) | 75 (62.71-85.54) | 18 (9.36-29.98) | 75 (62.71-85.54) |
| Poultry | 212 | 34 (27.62-40.76) | 100 (98.60-100) | 100 (98.60-100) | 100 (98.60-100) | 100 (98.60-100) | 80 (74.18-85.33) | 37 (30.29-43.67) | 39 (32.54-46.07) | 10 (6.24-14-74) | 41 (34.35-47.98) |
| Cattle | 67 | 65 (53.06-76.85) | 100 (95.63-100) | 100 (95.63-100) | 98 (91.96-99.96) | 100 (95.63-100) | 86 (76.03-93.67) | 65 (53.06-76.85) | 71 (59.31-81.99) | 8 (2.47-16.56) | 76 (64.14-85.69) |
| Other animal species1 | 51 | 31 (24.13-51.92) | 98 (89.55-99.95) | 100 (94.3-100) | 98 (89.55-99.95) | 100 (94.3-100) | 82 (69.13-91.6) | 31 (19.11-45.89) | 43 (29.35-57.75) | 12 (4.44-23.87) | 47 (32.93-61.54) |
| Food products2 | 90 | 53 (42.51-63.93) | 100 (96.73-100) | 100 (96.73-100) | 100 (96.73-100) | 100 (96.73-100) | 78 (67.79-85.87) | 49 (38.2-59.65) | 52 (41.43-62.87) | 11 (5.46-19.49) | 56 (44.7-66.04) |
| Human | 28 | 71 (51.33-86.78) | 100 (89.85-100) | 100 (89.85-100) | 100 (89.85-100) | 100 (89.85-100) | 86 (67.33-95.97) | 57 (37.18-75.54) | 64 (44.07-81.36) | 36 (18.64-55.93) | 64 (44.07-81.36) |
| Environment | 23 | 61 (38.54-80.29) | 96 (78.05-99.89) | 100 (87.79-100) | 100 (87.79-100) | 96 (78.05-99.89) | 91 (71.96-98.93) | 61 (38.54-80.29) | 61 (38.54-80.29) | 9 (1.07-28.04) | 65 (42.73-83.62) |
| Unknown | 6 | 0 (0-39.3) | 100 (60.7-100) | 100 (60.7-100) | 100 (60.7-100) | 100 (60.7-100) | 67 (22.28-95.67) | 0 (0-39.3) | 17 (0.42-64.12) | 33 (4.22-77.72) | 17 (0.42-64.12) |
| Total | 538 | 47 | 99 | 100 | 99 | 99 | 82 | 47 | 52 | 12 | 54 |
