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Table 2 Oligonucleotide primers

From: Role of the SaeRS two-component regulatory system in Staphylococcus epidermidisautolysis and biofilm formation

Target gene

GenBank accession no.

Primer*

Primer sequence

Location

Oligonucleotide primers used for RT real-time PCR

gyrB

57636585

gyrB-F

CTTATATGAGAATCCATCTGTAGG

1110-1263

  

gyrB-R

AGAACAATCTGCCAATTTACC

 

lrgA

57636056

lrgA-F

TGGACTTGTACTATTATTTATCGC

165-309

  

lrgA-R

AAGGATTGGTAAAGAGTTAATGAC

 

lytS

57636054

lytS-F

CTGTTCAAGATAATGGTCAAGG

1535-1680

  

lytS-R

CAGTGCCGATGTTGTTCC

 

serp0043

57636640

serp0043-F

CAAGCACAAGCGTCTTCATC

73-236

  

serp0043-R

ACTCTTTCACCATTATTTGTTTCAG

 

glpQ

57637130

glpQ-F

CCGTTACACTGGGTTTAGC

41-221

  

glpQ-R

TTACCACTTACTGAGTCTGATTC

 

arlR

57636010

arlR-F

AGAGAATGATGGAAAGGCAGGT

90-253

  

arlR-R

ATGTCTCGCTTTTCGCAGTAAT

 

atlE

57637180

atlE-F

AACAACCACAGAATCAGTCTAATC

92-237

  

atlE-R

TTGAACTTGGGTAGGGTCTTG

 

aae

57637180

aae-F

AACAAATTGATAAAGCAACG

1970-2186

  

aae-R

GTTGTCTTTCCTTTAGTGTC

 

aap

57636451

aap-F

AATAGAACCTACAACTTCAGAACC

945-1039

  

aap-R

TGTTATTGGATGAACTATCAGCAG

 

icaA

57636387

icaA-F

GGTTGTATCAAGCGAAGTC

556-754

  

icaA-R

ACATCCAGCATAGAGCAC

 

saeS

57636974

saeS-F

GGTATCGTTCCAGAACTTCAATC

757-881

  

saeS-R

ATTTGTTGTGCTAACTCATTTGC

 

saeR

57636975

saeR-F

CTCAAGAACATGACACGATATACG

245-354

  

saeR-R

TCTAGCGAGAAGGTTATTAGTACG

 

saeQ

57636990

saeQ-F

GCAAGTTTCTTTGGAGCCTTC

268-447

  

saeQ-R

CTTATCTTCACCTCGGTTATTACG

 

saeP

57636991

saeP-F

CTAACTCGGAAAGCGATCAC

71-258

  

saeP-R

GTCTGGACCTTTAGAAGATTTG

 

Oligonucleotide primers used for eDNA quantification

gyrA

57636584

gyrA-F

CCTTATGAAACTCGGAGATGG

2382-2489

  

gyrA-R

TCAGTAGTAGTAGATTGTTGCG

 

lysA

57637514

lysA-F

TGACAATGGGAGGTACAAGC

32-107

  

lysA-R

TGGTCTTCATCGTAAACAATCG

 

serp0306

57636873

serp0306-F

ATGCCACATCCACGAAAGA

203-381

  

serp0306-R

TGTAACTGACAATGCCCAATC

 

leuA

57638228

leuA-F

GTGAACGGTATTGGTGAAAGAG

685-762

  

leuA-R

GTGGTCCTTCCTTACATATAAAGC

 
  1. F, forward primer; R, reverse primer