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Table 2 Putative cre sites present in the promoter region of some L. sake i genes up-regulated in the present study.

From: Global transcriptome response in Lactobacillus sakei during growth on ribose

Gene locus Gene cresite sequencea Positionb Co-transcribed genes/operonc Gene locus
LSA0123 lsa0123 TGAAAGCGTTACAA -93   
LSA0185 galP GAACATCGTTATCA -46   
LSA0200 rbsU GTAAACCGTTTTCA -113 rbsUDK LSA0200-0202
LSA0254 lsa0254 TGTAAGCGTTTTAT -56 lsa0254-lsa0255-lsa0256_a LSA0254-0256_a
LSA0289 xpk CTATTACGATGACA -8   
LSA0292 budC TGTAACCGTTTTAA -51   
LSA0353 lsa0353 AGAAAGCGCTTATA -102   
LSA0370 arcA TGAAAGCGATTACC -58 arcA-arcB e -arcC-arcT e -arcD e LSA0370-0374
LSA0449 manL TGTTAGCGTTTTTA -56 manL-manM-manN LSA0449-0451
LSA0533 iunH2 AAAAAGCGTTCACA -35   
LSA0572 tdcB TGAAAACGTTCTAA -134   
LSA0608 Glo AN TGTAACCGTTTTAA -100 gloAN-gloAC LSA0608-0609
LSA0649 glpK AGGAAACGTTTTCC -42 glpK-glpD-glpF LSA0649-0651
LSA0664 loxL1 AGAAAGCGAGTACA -82 loxL1N-loxLI-loxL1C LSA0664-0666
LSA0764 galK TGAAAGCGATTAAT -30 galK-galE1-galT-galM LSA0764-0767
LSA0795 deoC TGAAAGCGTTAACA -33 deoC-deoB-deoD-lsa0798-lsa0799-deoR-pdp LSA0795-0801
LSA0974 pflB TACGAACGCTTACA -147 pflB-pflA LSA0974-0973
LSA1048 fruR e TGTAAACGATGACA -39 fruR e -fruK e -fruA LSA1048-1050
LSA1141 ppdK GGTTATCGATAAAA -29   
LSA1146 manA CGAAATCGCTTTAA -98   
LSA1188 pox1 TGTAATCGATTTCA -88   
LSA1204 lsa1204 TGTAATCGTTTTTT -127   
LSA1343 eutD GTAAAACGCTCTCA -94   
LSA1399 loxL2 TGTAAACGATTTCA -42   
LSA1457 lsa1457 TGATAACGCTTACA -85   
LSA1463d ptsH TGAAAGCGGTATAG -161 ptsHI LSA1463-1462
LSA1641 nanE TGTAAGCGGTTAAT -85 nanE-nanA LSA1641-1640
LSA1643 lsa1643 TGATAACGCTTACA -31   
LSA1651 lsa1651 GGTAAGCGGTTAAA -148   
LSA1711 lacL TGAAACCGTTTTAA -36 lacL-lacM LSA1711-1710
LSA1792 scrA TGTAAACGGTTGTA -78 scrA-dexB-scrK LSA1792-1790
LSA1830 pox2 TTGTAACGCTTACA -70   
  1. The identification is based on the genome sequence of L. sakei strain 23K, and the consensus sequence TGWNANCG NTNWCA (W = A/T, N = A/T/G/C), confirmed in Gram-positive bacteria [39] was used in the search, allowing up to two mismatches (underlined) in the conserved positions except for the two center positions, highlighted in boldface.
  2. a mismatch to consensus sequence is underlined
  3. b position of cre in relation to the start codon
  4. c suggested co-transcribed genes or genes organized in an operon
  5. d cre in preceding gene encoding hypothetical protein
  6. e gene not regulated in this study