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Table 2 Diversity analyses of the gut microbiomes using 16S rRNA gene sequences

From: Comparative fecal metagenomics unveils unique functional capacity of the swine gut

Metagenome Sobs Chao1 ACE Jackknife Shannon Shannon (non-parametric) Simpson boneh coverage
Pig Feces GS20 52 77.09 (61.24-120.12) 116.05 (89.07-162.68) 76.88 (62.74-91.02) 3.17 (3.03-3.32) 3.36 0.07 (0.05-0.08) 10.34 0.91
Pig Feces FLX 71 113.86 (86.42-190.10) 125.60 (103.78-161.95) 119.78 (92.49-147.06) 3.19 (3.10-3.29) 3.27 0.08 (0.07-0.09) 5.84 0.97
Cow Rumen 40 63.00 (48.33-103.51) 168.17 (120.97-242.89) 63.63 (49.92-77.33) 2.56 (2.35-2.77) 2.86 0.15 (0.11-0.19) 10.58 0.88
Chicken Cecum 37 47.11 (39.89-72.43) 68.02 (52.45-99.29) 51.00 (40.63-61.37) 2.25 (2.11-2.39) 2.36 0.20 (0.17-0.23) 5.58 0.97
Human In-A 20 33.75 (23.40-75.55) 62.23 (41.01-104.88) 32.94 (22.19-43.70) 2.52 (2.25-2.79) 2.84 0.10 (0.06-0.15) 5.05 0.81
Human In-B 10 20.50 (12.03-64.19) 27.79 (13.32-105.26) 23.03 (10.30-35.76) 0.84 (0.50-1.17) 1.15 0.68 (0.53-0.82) 3.02 0.90
Human In-D 26 32.00 (27.33-53.10) 34.06 (28.41-52.93) 35.00 (26.68-43.32) 2.97 (2.80-3.13) 3.16 0.05 (0.04-0.07) 4.95 0.90
Human In-E 18 22.20 (18.79-40.34) 26.41 (20.24-49.62) 25.00 (17.67-32.33) 1.11 (0.88-1.34) 1.26 0.60 (0.51-0.69) 3.72 0.96
Human In-M 26 46.00 (32.02-92.48) 80.76 (54.86-129.91) 43.95 (31.51-56.39) 2.97 (2.72-3.22) 3.42 0.05 (0.02-0.08) 7.34 0.69
Human In-R 21 23.50 (21.41-36.27) 26.77 (22.44-44.13) 27.00 (20.21-33.79) 2.57 (2.38-2.76) 2.72 0.10 (0.07-0.13) 2.83 0.87
Human F1-S 22 31.00 (24.00-62.45) 39.21 (29.33-62.40) 31.00 (22.68-39.32) 2.68 (2.49-2.87) 2.85 0.08 (0.06-0.10) 4.30 0.90
Human F1-T 37 64.14 (46.04-118.51) 109.84 (79.72-161.17) 66.22 (47.95-84.48) 3.05 (2.83-3.26) 3.36 0.07 (0.04-0.10) 9.39 0.82
Human F1-U 17 20.75 (17.64-39.02) 21.96 (18.14-38.53) 23.00 (16.21-29.79) 2.30 (2.04-2.56) 2.49 0.15 (0.08-0.21) 3.22 0.91
Human F2-V 37 46.10 (39.59-68.96) 48.59 (41.00-70.52) 51.00 (40.63-61.37) 3.07 (2.89-3.26) 3.29 0.07 (0.05-0.09) 7.64 0.87
Human F2-W 25 36.00 (27.88-66.94) 55.50 (39.11-90.92) 37.00 (27.40-46.60) 2.72 (2.50-2.93) 2.96 0.08 (0.06-0.11) 5.85 0.86
Human F2-X 19 21.00 (19.29-32.96) 22.80 (19.83-36.32) 24.00 (17.80-30.20) 2.57 (2.38-2.76) 2.72 0.09 (0.06-0.12) 3.06 0.94
Human F2-Y 27 40.20 (30.44-77.60) 41.54 (31.66-72.36) 39.78 (29.54-50.01) 2.87 (2.67-3.08) 3.10 0.07 (0.05-0.09) 5.82 0.87
Mouse Cecum 14 36.50 (19.23-110.77) 41.22 (20.35-130.67) 39.09 (19.22-58.95) 2.18 (1.78-2.58) 2.69 0.15 (0.04-0.25) 4.13 0.67
Termite Gut 13 27.00 (15.92-80.11) 30.75 (16.84-95.03) 29.19 (14.56-43.82) 2.05 (1.72-2.38) 2.38 0.16 (0.09-0.23) 3.39 0.79
Fish gut 14 19.00 (14.86-42.91) 20.45 (15.44-42.93) 20.00 (13.21-26.79) 2.29 (2.05-2.54) 2.50 0.11 (0.07-0.15) 3.71 0.87
Pig Feces Total 91 127.25 (105.56-181.27) 184.42 (150.70-237.20) 127.57 (108.75-146.39) 3.15 (3.11-3.20) 3.19 0.06 (0.06-0.07) 0.34 0.99
Human Infant Total 59 80.00 (66.47-118.05) 83.37 (69.43-115.92) 82.03 (68.30-95.75) 2.66 (2.52-2.79) 2.78 0.17 (0.14-0.20) 1.25 0.96
Human Adult Total 72 89.00 (77.34-126.16) 85.74 (77.28-107.71) 89.60 (77.72-101.48) 3.35 (3.30-3.40) 3.39 0.05 (0.04-0.05) 0.37 0.99