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Table 3 A summary of CoBaltDB integrated databases and tools features.

From: CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources

Databases Reference Features predicted Genome(s) Protein numbers
EchoLOCATION [124] Subcellular-location (EXP) E. coli K-12 4330 (506 exp)
Ecce _ Subcellular-location E. coli K-12 306
LocateP DataBase [89] Subcellular-location 178 MD 542788
cPSORTdb [91] Subcellular-location 140 BA 1634278
ePSORTdb [91] Subcellular-location (EXP)   2165
THGS [125] Transmembrane Helices 689 PROK 465411
Augur [88] Subcellular-location 126 MD 111223
CW-PRED [126] Cell-anchored (surface) 94 MD 954
PROFtmb [78] Beta-barrel (OM) 78 DD/19 MD 2152
HHomp [127] Beta-barrel (OM)   12495
PRED-LIPO [58] Lipoprotein SPs 179 MD 895
SPdb [90] Signal peptides (SPs) 855 PROK 7062
ExProt [128] Signal peptides (SPs) 23 AR/61 MD/115DD  
Signal Peptide Website _ Signal peptides (SPs) 384 BA 1161 (EXP)
PRED-SIGNAL [129] Signal peptides (SPs) 48 AR 9437
TMPDB [130] Alpha Helices & Beta-barrel   188
DTTSS Shandong Univ. Type III secretion system   1035
TOPDB [131] Transmembrane Proteins 755 BA/16 AR  
TMBC-Database Andrew Garrow Transmembrane Beta-barrel   1219
Swissprot signal testset [132] Signal peptides (SPs) (EXP) 176 SP+/122 SP-  
  1. MD = monoderm, DD = diderm. AR (Archeae), BA (Bacteria), PROK (Prokaryotes) include both bacteria and Archaee, EXP = Experimental database