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Table 2 Clinical specimens analyzed in the present study.

From: Rapid Leptospira identification by direct sequencing of the diagnostic PCR products in New Caledonia

Specimen identification Source Leptospira concentration based on qPCR[15] lfb1-based cluster (see results)
08323250 Human serum < 50/ml L. borgpetersenii 1
08238362 Human serum < 50/ml L. interrogans 3
09022251 Human serum < 50/ml L. interrogans 2
09037333 Human serum < 50/ml L. interrogans 3
09046172 Human serum < 50/ml L. interrogans 2
09068284 Human serum < 50/ml L. borgpetersenii 1
09106497 Human serum < 50/ml L. interrogans 2
09110512 Human serum < 50/ml L. interrogans 4
09139265 Human serum < 50/ml L. borgpetersenii 1
09162317 Human serum < 50/ml L. borgpetersenii 1
09337238 Human serum < 50/ml L. interrogans 3
10032221 Human serum < 50/ml L. borgpetersenii 1
10073167 Human serum < 50/ml L. interrogans 1
08099430 Human serum (fatal case) 50/ml L. interrogans 2
09073008 Human serum 50/ml L. interrogans 2
09131462 Human serum 55/ml L. borgpetersenii 1
09117472 Human serum 60/ml L. borgpetersenii 1
09233024 Human serum 200/ml L. interrogans 1
08121411 Human serum 320/ml L. interrogans 4
09100462 Human serum 320/ml L. interrogans 5
09031188 Human serum 920/ml L. interrogans 1
08095345 Human serum (fatal case) 1100/ml L. interrogans 1
09043326 Human serum 1100/ml L. interrogans 5
09210289 Human serum 1100/ml L. interrogans 5
09145359 Human serum 1600/ml L. interrogans 1
09044463 Human serum (fatal case) 5800/ml L. interrogans 5
09243410 Human serum (fatal case) 6300/ml L. interrogans 1
Deer 16 Deer kidney < 50/mg L. borgpetersenii 2
Deer 39 Deer kidney < 50/mg L. interrogans 1
Deer 3 Deer kidney 50/mg L. interrogans 4
Deer 10 Deer kidney 80/mg L. borgpetersenii 2
Deer 13 Deer kidney 82/mg L. interrogans 1
Deer 9 Deer kidney 88/mg L. borgpetersenii 2
Deer 14 Deer kidney 300/mg L. borgpetersenii 2
Deer 15 Deer kidney 675/mg L. borgpetersenii 2
Deer 21 Deer kidney 625/mg L. borgpetersenii 2
Deer 2 Deer kidney 1100/mg L. interrogans 4
Deer 27 Deer kidney 3700/mg L. interrogans 4
  1. GenBank accession numbers of the sequences obtained from these specimens are provided in additional file 1 Table S2.