Table 3 Features of PCR-amplified mycobacterial rhomboids
From: Rhomboid homologs in mycobacteria: insights from phylogeny and genomic analysis
| Â | Primer | Species/Strain | Amplicon size (bp) | ORF (bp) | Amino acids | Accession numberh | Protein ID |
|---|---|---|---|---|---|---|---|
Orthologs of Rv0110 (rhomboid protease 1) | 0110F 0110R | aH37Rv | 967 | 855 | 284 | HM453890 | ADO17908 |
| Â | Â | bBCG | 967 | 855 | 284 | HM453894 | ADO17912 |
| Â | Â | cJN55 | 967 | 855 | 284 | HM453896 | ADO17914 |
| Â | Â | dBN44 | 967 | 855 | 284 | HM453892 | ADO17910 |
| Â | 5036F 5036R | eSMR5 | 1000 | 891 | 296 | HM453900 | ADO17919 |
Orthologs of Rv1337 (rhomboid protease 2) | 1337F 1337R | H37Rv | 869 | 723 | 240 | HM453891 | ADO17909 |
| Â | Â | BCG | 869 | 723 | 240 | HM453895 | ADO17913 |
| Â | Â | JN55 | 869 | 723 | 240 | HM453897 | ADO17915 |
| Â | Â | BN44 | 869 | 723 | 240 | HM453897 | ADO17911 |
| Â | 1554F 1554R | fSU-36800 | 954 | 672 | 223 | HM453898 | ADO17916 |
| Â | Â | g27 | 954 | 291 (MAP2426c) | 72 | HM453899 | ADO17917 |
| Â | Â | Â | Â | 444 (MAP2425c) | 147 | HM453899 | ADO17917 |
| Â | 4904F 4904R | SMR5 | 845 | 738 | 245 | HM453901 | ADO17920 |