Skip to main content

Table 2 Gene names.

From: Vibrio chromosomes share common history

Short name

Long name

Tree type

C1

  

LysR

Transcriptional Regulator LysR

AA

Mdr

Multidrug Resistance Protein

AA

UPD

UDP-N-acetylglucosamine pyrophosphorylase

AA

Epsilon

ATP synthase F1 epsilon subunit

DNA

Beta

ATP synthase F1 Beta subunit

AA

Gamma

ATP synthase F1 Gamma subunit

AA

Alpha

ATP synthase F1 Alpha subunit

DNA

Delta

ATP synthase F1 Delta subunit

DNA

Bsub

ATP synthase F0 B subunit

DNA

Csub

ATP synthase F0 C subunit

n/a

Asub

ATP synthase F0 A subunit

DNA

Isub

ATP synthase F0 I subunit

DNA

ParB

Chromosome Partitioning Protein ParB

AA

ParA

Chromosome Partitioning Protein ParA

AA

GidB

Glucose inhibited division protein B

AA

GidA

Glucose inhibited division protein A

AA

MioC

Flavodoxin

AA

ThdF

Thiophene and furan oxidation protein

DNA

YidC

60 kDa inner membrane insertion protein

AA

RnpA

Ribonuclease P

AA

RpmH

Ribosomal protein L34

n/a

ABC1

Amino acid ABC transporter, ATP-binding protein

AA

ABC2

Amino acid ABC transporter, permease protein

AA

ABC3

Amino acid ABC transporter, periplasmic amino acid-binding portion

AA

DnaA

Chromosomal DNA replication initiator

AA

DnaN

DNA Polymerase III, beta chain

AA

RecF

Recombination Protein F

DNA

GyrB

DNA Gyrase

DNA

C2

  

MetC

methyl-accepting chemotaxis protein

AA

GluP

glucose-1-phosphate adenylyl transferase

AA

PyrD

pyridoxamine 5'-phosphate oxidase

DNA

GTP

GTP cyclohydrolase II

DNA

Hyp

Hypothetical Protein

AA

TraR

transcriptional repressor

DNA

RctB

Putative Translation Elongation Factor

AA

ParA2

ATPases involved in Chromosome Partitioning

AA

ParB2

Predicted Transcriptional Regulator ParB

AA

ChrR

Transcriptional Activator ChrR

AA

Poly

Polymerase, hypothetical cytosolic protein

AA

Chlor

Chloramphenicol Acetyltransferase

AA

  1. The genes surrounding the origins of replication otherwise identified by short names are described by their longer annotation names. In addition, the data (DNA or AA) used to create the trees is listed. This relates to the degree of conservation in the data; more conserved sequences require DNA trees to provide signal, less conserved sequences require AA trees to avoid excessive noise.