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Table 1 Probe set of the HTF-Microbi.Array.

From: High taxonomic level fingerprint of the human intestinal microbiota by Ligase Detection Reaction - Universal Array approach

PROBE N. TAXONOMIC LEVEL CLUSTER ORDER DIVISION ECO H.G. AB %
Bacteroides/Prevotella 16 Cluster Bacteroides/Prevotella Bacteroidales Bacteroidetes M 20
Ruminococcus bromii 38 Sub cluster Cl IV Clostridiales Firmicutes M  
Ruminococcus albus 39 Sub cluster Cl IV Clostridiales Firmicutes M  
Faecalibacterium prausnitzii 40 Sub cluster Cl IV Clostridiales Firmicutes M  
Oscillospira guillermondii 41 Sub cluster Cl IV Clostridiales Firmicutes M 65
Clostridium IX 37 Cluster Cl IX Clostridiales Firmicutes M  
Veilonella 20 Species (et rel) Cl IX Clostridiales Firmicutes M  
Clostridium XIVa 22 Cluster Cl XIVa Clostridiales Firmicutes M  
Eubacterium rectale 19 Species (et rel) Cl XIVa Clostridiales Firmicutes M  
Bifidobacteriaceae 25B Family Bifidobacterium Bifidobacteriales Actinobacteria M 5
B. longum 3 Species (et rel) Bifidobacterium Bifidobacteriales Actinobacteria M  
Lactobacillaceae 21B Family Lactobacillaceae Lactobacillales Firmicutes M  
L. plantarum 33 Species (et rel) Lactobacillaceae Lactobacillales Firmicutes M <1
L. casei 12 Species (et rel) Lactobacillaceae Lactobacillales Firmicutes M  
L. salivarius 14 Species (et rel) Lactobacillaceae Lactobacillales Firmicutes M  
Bacillus clausii 32 Species (et rel) Bacillaceae Bacillales Firmicutes M <1
Bacillus subtilis 8 Species (et rel) Bacillaceae Bacillales Firmicutes M <1
Fusobacterium 15 Genus Fusobacteriaceae Fusobacteria Fusobacteria M <0.5
Cyanobacteria 42 Family Cyanobacteria Cyanobacteria Cyanobacteria M <0.1
Clostridium XI 36 Cluster Cl XI Clostridiales Firmicutes O 0
Clostridium difficile 18 Species (et rel) Cl XI Clostridiales Firmicutes O  
Clostridium I and II 35 Cluster Cl I and II Clostridiales Firmicutes O 0
Clostridium perfringens 17 Species (et rel) Cl I and II Clostridiales Firmicutes O  
Enterococcus faecalis 9 Species (et rel) Enterococcales Lactobacillales Firmicutes O <1
Enterococcus faecium 10 Species (et rel) Enterococcales Lactobacillales Firmicutes O <1
Bacillus cereus 7 Species (et rel) Bacillaceae Bacillales Firmicutes P 0
Enterobacteriaceae 23B Family Enterobacteraceae Enterobacterales Proteobacteria O/P <8
Yersinia enterocolitica 4 Species (et rel) Enterobacteraceae Enterobacterales Proteobacteria O/P 0
Proteus 5 Genus Enterobacteraceae Enterobacterales Proteobacteria O/P 0
Campylobacter 6 Genus Campylobacteraceae Campylobacterales Proteobacteria P 0
  1. For each probe is indicated the spot number, the phylogenetic level, the phylogeny of the target group, the ecology in the gastrointestinal ecosystem [mutualistic (M), opportunistic (O), pathogen (P)]. The relative abundance in a healthy gut ecosystem of the principal microbial groups is also indicated.