Fig. 2

Temporal and spatial patterns of transcriptional activation in WC1. (A) Phage expression patterns over time. Parallel coordinate plots (left) show relative counts of phage transcripts for Early, Middle, and Late genes. The counts are transcripts per million (TPM) normalized internally for each gene, i.e. with respect to the lowest expression level for that individual gene. The heatmap (right) shows log TPM averaged at each time point and subsequently standardized. The standardization is performed by column. (B) Genomic locations of early, middle, and late genes in WC1. Colors used in the genome map correspond to those in A