Table 6 UTI89 genes downregulated in J82 BECs. BLAST results of hypothetical proteins are represented in parentheses. Genes located on the UTI89 plasmid are marked in bold
From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli
Genes downregulated during growth in J82 BECs | Protein | Number of genes in operon | rLogFC |
|---|---|---|---|
repB | replication protein | 1 | 2,011113132 |
htgA | positive regulator for sigma 32 heat shock promoters | 1 | 1,890514455 |
UTI89_P010 | hypothetical protein (iron permease/transporter (membrane protein)) | 1 | 1,861559188 |
ribF | bifunctional riboflavin kinase/FMN adenylyltransferase | 1 | 1,859516233 |
yaaY | hypothetical protein | 1 | 1,848940285 |
ydiA | hypothetical protein | 1 | 1,753697215 |
gyrB | DNA gyrase subunit B | 1 | 1,74780503 |
rob | right origin-binding protein | 1 | 1,738152589 |
yajK | thiamine biosynthesis protein ThiI | 1 | 1,638543917 |
creA | hypothetical protein (protein CreA (Catabolite regulation protein A)) | 1 | 1,635400678 |
ytfB | hypothetical protein (Opacity-associated protein A) | 1 | 1,617894201 |
UTI89_P053 | hypothetical protein | 1 | 1,614324659 |
yjjX | NTPase | 1 | 1,60329406 |
UTI89_P144 | hypothetical protein (putative endonuclease) | 1 | 1,577892223 |
yccW | hypothetical protein (ribosomal RNA large subunit methyltransferase) | 1 | 1,516636602 |
UTI89_P046; UTI89_P047 | hypothetical serine-threonine protein kinase hypothetical protein | 2 | 1,513872693 |