Sample | Primer sequence | Barcode | Ref |
---|---|---|---|
V4-V5 primer | Â | Â | [23] |
 Forward primer | AATGATACGGCGACCACCGAGATCTACACTATGGTAATTGGGTGCCAGCMGCCGCGGTAA |  |  |
 Read 1 primer | TATGGTAATTGGGTGCCAGCMGCCGCGGTAA |  |  |
 Read 2 primer | AGTCAGTCAGTTCCGTCAATTYYTTTRAGTTT |  |  |
 Index primer | AAACTYAAARRAATTGACGGAACTGACTGACT |  |  |
Reverse barcoded primers | |||
 PBS Qiagen | CAAGCAGAAGACGGCATACGAGATTAACGTGTGTGCAGTCAGTCAGTTCCGTCAATTYYTTTRAGTTT | TAACGTGTGTGC |  |
 PBS RBB | CAAGCAGAAGACGGCATACGAGATCATTATGGCGTGAGTCAGTCAGTTCCGTCAATTYYTTTRAGTTT | CATTATGGCGTG |  |
 Qiagen Glycerol | CAAGCAGAAGACGGCATACGAGATCCAATACGCCTGAGTCAGTCAGTTCCGTCAATTYYTTTRAGTTT | CCAATACGCCTG |  |
 RBB Glycerol | CAAGCAGAAGACGGCATACGAGATGATCTGCGATCCAGTCAGTCAGTTCCGTCAATTYYTTTRAGTTT | GATCTGCGATCC |  |
 Mock DNA | CAAGCAGAAGACGGCATACGAGATCAGCTCATCAGCAGTCAGTCAGTTCCGTCAATTYYTTTRAGTTT | CAGCTCATCAGC |  |
V1-V2 set 1 | Â | Â | [4] |
 Forward primer | AATGATACGGCGACCACCGAGATCTACACTATGGTAATTTCAGAGTTTGATCCTGGCTCAG |  |  |
 Read 1 primer | TATGGTAATTTCAGAGTTTGATCCTGGCTCAG |  |  |
 Read 2 primer | AGTCAGTCAGCATGCTGCCTCCCGTAGGAGT |  |  |
 Index primer | ACTCCTACGGGAGGCAGCATGCTGACTGACT |  |  |
Reverse barcoded primers | |||
 PBS Qiagen | CAAGCAGAAGACGGCATACGAGATTCTTGGAGGTCAAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | TCTTGGAGGTCA |  |
 PBS RBB | CAAGCAGAAGACGGCATACGAGATTCACCTCCTTGTAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | TCACCTCCTTGT |  |
 Qiagen Glycerol | CAAGCAGAAGACGGCATACGAGATGCACACCTGATAAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | GCACACCTGATA |  |
 RBB Glycerol | CAAGCAGAAGACGGCATACGAGATGCGACAATTACAAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | GCGACAATTACA |  |
 Mock DNA | CAAGCAGAAGACGGCATACGAGATTCATGCTCCATTAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | TCATGCTCCATT |  |
V1-V2 degenerate | Â | [17] | |
 Forward primer | AATGATACGGCGACCACCGAGATCTACACTATGGTAATTTCAGMGTTYGATYMTGGCTCAG |  |  |
 Read 1 primer | TATGGTAATTTCAGMGTTYGATYMTGGCTCAG |  |  |
 Read 2 primer | AGTCAGTCAGCATGCTGCCTCCCGTAGGAGT |  |  |
 Index primer | ACTCCTACGGGAGGCAGCATGCTGACTGACT |  |  |
Reverse barcoded primers | |||
 PBS Qiagen | CAAGCAGAAGACGGCATACGAGATTCTTGGAGGTCAAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | TCTTGGAGGTCA |  |
 PBS RBB | CAAGCAGAAGACGGCATACGAGATTCACCTCCTTGTAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | TCACCTCCTTGT |  |
 Qiagen Glycerol | CAAGCAGAAGACGGCATACGAGATGCACACCTGATAAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | GCACACCTGATA |  |
 RBB Glycerol | CAAGCAGAAGACGGCATACGAGATGCGACAATTACAAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | GCGACAATTACA |  |
 Mock DNA | CAAGCAGAAGACGGCATACGAGATTCATGCTCCATTAGTCAGTCAGCATGCTGCCTCCCGTAGGAGT | TCATGCTCCATT |  |