From: Salmonella Typhimurium undergoes distinct genetic adaption during chronic infections of mice
SRA accession numbera | Mouse ID | Sample | Clone | WITS ID | WITS prevalence | SNPb | Coordinates in ST4/74 genomec | Gene affected and amino acid effectd,e |
---|---|---|---|---|---|---|---|---|
SAMN04230908 | 5A | Feces, 6 weeks | 2A | 7 | 63 % | G- > T | 1895850 | kdgR, V61L |
SAMN04230909 | 5B | Feces, 4 weeks | 1A | 4 | >96 % | A- > G G- > A | 22493 2578136 | Synonymous, located in STM474_0020 Synonymous, located in maeB |
SAMN04230910 | 5C | Feces, 6 weeks | 2A | 7 | 88 % | G- > T | 1895850 | kdgR, V61L |
SAMN04230911 | 5D | Feces, 4 weeks | 1A | 7 | 96 % | G- > T | 1895850 | kdgR, V61L |
SAMN04230912 | 5E | Spleen | 1A | 1 | 63 % | Deletion, T A- > G | 3962521 63854 | Promoter region of yicE Synonymous, located in STM474_0057 |
SAMN04230913 | 5E | Liver | 1A | 3 | 98 % | C- > A | 3507750 | ptsN, S21R |
SAMN04230914 | 5E | Feces, 6 weeks | 1A | 3 | >98 % | C- > A | 3507750 | ptsN, S21R |