Serotype | Strain name | Gene accession | Virulence, IS, and other biomarker genes | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
fliCH4 | fliCH7 | fliCH21 | wzxO104 | wzyO104 | stx2 | tehB | iha | lpfa_O104 | ent | tir | stx 1 | eae | Efa1 | lpfa-O157 | tccp | tccp2 | IS629 | CRISPR2 | |||
O104:H7 | RM9387 | CP009104 | - | + | - | + | + | + | + | - | + | - | - | - | - | - | - | - | - | - | - |
O104:H21 | 94-3024 | CP009106 | - | - | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | - | - |
O104:H21 | BAA-178 (CDC 1994-3024) (CFSAN002236) | SRX319158 | - | - | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | - | - |
O104:H21 | BAA-182 (CDC 1994-3023) (CFSAN002237) | SRX319159 | - | - | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | - | - |
O104:H4 | 2009EL-2050 | NC_018650.1 | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | 2009EL-2071 | NC_018661.1 | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | 2011C-3493 | NC_018658.1 | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | LB226692 | SRR254209 | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | TY-2482 | SRX067313 | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | C760-09 | SRX078303 | + | - | - | + | + | - | + | - | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | C777-09 | SRX078304 | + | - | - | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | C734-09 | SRX078308 | + | - | - | + | + | - | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H4 | C754-09 | SRX078302 | + | - | - | + | + | - | + | + | + | - | - | - | - | - | - | - | - | + | + |
O104:H- | 4281-7 | FM872416.1 | na | na | na | na | na | na | na | na | na | na | na | na | + | na | na | na | na | na | na |
O91:H21 | B2F1 | AGTI01000001-AGTI01000233 | - | - | + | - | - | + | + | + | + | - | - | - | - | - | - | - | - | - | - |
O113:H21 | CL-3 | NZ_AGTH01000001-NZ_AGTH01000258 | - | - | + | - | - | + | + | + | - | - | - | - | - | - | - | + | + | - | - |
O157:H7 | Sakai | NC_002695 | - | + | - | - | - | + | + | + | - | + | + | + | + | - | + | + | + | + | - |
O145:H28 | 4865/96 | AGTL01000001-AGTL01000345 | - | - | - | - | - | + | + | + | - | + | + | - | + | + | + | + | + | + | - |
O45:H2 | 03-EN-705 | AGTK01000001-AGTK01000433 | - | - | - | - | - | - | + | - | + | + | - | + | + | + | - | + | + | + | - |
O26:H11 | Str. 11368 | NC_013361 | - | - | - | - | - | - | + | + | + | + | - | + | + | + | - | - | - | + | - |
O121:H19 | MT#2 | AGTJ01000001-AGTJ01000389 | - | - | - | - | - | + | + | - | - | + | - | - | + | + | - | + | + | + | - |
O103:H2 | Str. 12009 | NC_013353 | - | - | - | - | - | + | + | - | + | + | - | + | + | + | - | - | - | + | - |
O111:H- | 11128 | NC_013364 | - | - | - | - | - | + | + | + | + | + | - | + | + | + | - | - | - | + | - |
O111:H21 | Str. 226 | SRX160797 | - | - | + | - | - | + | + | - | - | - | - | - | + | - | - | + | + | + | - |