Primer designation | oligonucleotides | Target/application | Predicted product | Reference/source |
---|---|---|---|---|
CVD432F | 5'-CTG GCG AAA GAC TGT ATC AT-3' | AA probe (CVD 432) | 629 bp | [43] |
CVD432R | 5'-CAA TGT ATA GAA ATC CGC TGT T-3' | Â | Â | Â |
aapF | 5'-CTT GGG TAT CAG CCT GAA TG-3' | aap, encoding the enteroaggregative E. coli plasmid-borne anti-aggregation protein, dispersin | 310 bp | [44] |
aapR | 5'-AAC CCA TTC GGT TAG AGC AC-3' | Â | Â | Â |
aggAF | 5'-TTA GTC TTC TAT CTA GGG-3' | aggA, encoding the structural subunit of aggregative adherence fimbriae I | 450 bp | [17] |
aggAR | 5'-AAA TTA ATT CCG GCA TGG-3' | Â | Â | Â |
aggRF | 5'-CTA ATT GTA CAA TCG ATG TA-3' | aggR, encoding the enteroaggregative E. coli plasmid-borne aggregative adherence regulator | 457 bp | [44] |
aggRR | 5'-AGA GTC CAT CTC TTT GAT AAG-3' | Â | Â | Â |
M13F | 5'-GGT TTT CCC AGT CAC GAC-3' | Vector priming sequencing primer | Not applicable | Â |
M13R | 5'-CAG GAA ACA GCT ATG ACC-3' | Vector priming sequencing primer | Not applicable | Â |
aafBdaaDF | 5'-CCTGCGGGATGTTACT-3' | aafB from EAEC and daaD from DAEC | 333/339 | This study |
aafBdaaDR | 5'-GCCATCACATCAAAAA-3' | Â | Â | Â |