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Table 2 F. tularensis strains used to evaluate SNP diagnostic markers

From: Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay

S. No.

Isolate

Subspecies

Clade

Geographic Source

Year isolated

1

ND00-0952

type A

A1 (A1a)

North Dakota

2000

2

MO01-1907

type A

A1 (A1a)

Missouri

2001

3

AR00-0028

type A

A1 (A1a)

Arkansas

2000

4

KS00-0948

type A

A1 (A1a)

Kansas

2000

5

OK01-2528

type A

A1 (A1a)

Oklahoma

2001

6

CA00-0036

type A

A1 (A1a)

California

2000

7

AR98-2146

type A

A1 (A1a)

Arkansas

1998

8

GA02-5497

type A

A1 (A1a)

Virginia

1982

9

NC01-5379

type A

A1 (A1b)

North Carolina

2001

10

NY04-2787

type A

A1 (A1b)

New York

2004

11

AK96-2888

type A

A1 (A1b)

Alaska

1996

12

OK02-0195

type A

A1 (A1b)

Oklahoma

2002

13

PA04-2790

type A

A1 (A1b)

Pennsylvania

2004

14

CA04-2258

type A

A1 (A1b)

California

2004

15

GA02-5375

type A

A1 (A1b)

New York

1977

16

WY03-1228

type A

A2

Wyoming

2003

17

CO01-3713

type A

A2

Colorado

2001

18

UT07-4362

type A

A2

Utah

2007

19

TX00-1591

type A

A2

Texas

2000

20

GA02-5453

type A

A2

Wyoming

1993

21

WY01-3911

type A

A2

Wyoming

2001

22

NM99-0295

type A

A2

New Mexico

1999

23

ID04-2687

type A

A2

Oregon

2004

24

AZ00-1180

type B

 

Arizona

2000

25

AZ00-1324

type B

 

Arizona

2000

26

SP03-1782

type B

 

Spain

2003

27

WA98-1774

type B

 

Washington

1998

28

E3443

type B

 

Oregon

1978

29

SP98-2108

type B

 

Spain

1998

30

OR98-0719

type B

 

Oregon

1998

31

RC503

type B

 

Russia

-

32

SP03-1783

type B

 

Spain

2003

33

CN98-5979

type B

 

Canada

1998

34

NY98-2295

type B

 

New York

1998

35

TX03-3834

type B

 

Mississippi

2003

36

IN00-2758

type B

 

Indiana

2000

37

F4853

type B

 

California

1983

38

OH01-3029

type B

 

Kansas

2001

39

CO05-3922

type B

 

Colorado

2005