Table 4 E. coli MG1655 gene expression ratios compared to homologous gene expression ratios of S. Typhimurium [51].
From: Characterization of Escherichia coli MG1655 grown in a low-shear modeled microgravity environment
E. coli MOPS LSMMG up-regulated | homologous Salmonella genes | ||||
|---|---|---|---|---|---|
gene | b# | ratio | gene | STM ID# | ratio |
flgB | b1073 | 2.08 | flgB | STM1174 | <2 |
flgD | b1075 | 1.96 | flgD | STM1176 | <2 |
flgE | b1076 | 2.40 | flgE | STM1177 | <2 |
ydfD | b1576 | 2.64 | not present | Â | Â |
fliZ | b1921 | 2.22 | fliZ | STM1955 | <2 |
dctR | b3507 | 2.58 | not present | Â | Â |
hdeB | b3509 | 6.25 | slyA | STM1444 | <2 |
hdeA | b3510 | 4.41 | slyA | STM1444 | <2 |
hdeD | b3511 | 3.51 | not present | Â | Â |
gadE | b3512 | 2.56 | not present | Â | Â |
E. coli MOPS LSMMG down-regulated | homologous Salmonella genes | ||||
gene | b# | ratio | gene | STM ID# | ratio |
copA | b0484 | -2.37 | copA | STM0498 | <2 |
ybcH | b0567 | -3.25 | not present | Â | Â |
cusC | b0572 | -2.74 | STM0350 | STM0350 | <2 |
cusF | b0573 | -4.13 | not present | Â | Â |
cusA | b0575 | -3.33 | STM0350 | STM0350 | <2 |
uspG | b0607 | -2.58 | ybdQ | STM0614 | <2 |
yfiA | b2597 | -2.84 | yfia | STM2665 | <2 |
accB | b3255 | -2.67 | accB | STM3379 | <2 |
cpxP | b3913 | -2.85 | cpxP | STM4060 | <2 |
E. coli LB LSMMG up-regulated | homologous Salmonella genes | ||||
gene | b# | ratio | gene | STM ID# | ratio |
accA | b0185 | 1.97 | accA | STM0232 | <2 |
E. coli LB LSMMG down-regulated | homologous Salmonella genes | ||||
gene | b# | ratio | gene | STM ID# | ratio |
sucD | b0729 | -1.77 | sucD | STM0739 | -3.33 |
rimM | b2608 | -2.07 | rimM | STM2675 | <2 |
rpsP | b2609 | -2.48 | rpsP | STM2676 | <2 |
rplA | b3984 | -2.03 | rplA | STM4150 | <2 |
rplJ | b3985 | -2.49 | rplJ | STM4151 | <2 |
rpsF | b4200 | -2.23 | rpsF | STM4391 | <2 |
rpsR | b4202 | -2.41 | rpsR | STM4393 | <2 |
rplI | b4203 | -2.06 | rplI | STM4394 | <2 |