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Table 2 Five examples of genomic difference from three categories: Bp-specific; Bt-specific and Bp-Bt divergent. Genes associated with genomic islands are not included in this table

From: Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis

Bp-specific genes

Bt-specific genes

Bp-Bt divergent genes

Bp genes

Functional notes

Size (Kb)

GC (%)

Bt genes

Functional notes

Size (Kb)

GC (%)

Bt genes

Functional notes of Bt gene

Size (Kb)

GC (%)

Bp genes

Functional notes of Bp gene

Size (Kb)

GC (%)

BPSS0995-

Secondary metabolites

69

71.7

BTH_II1662-

Polyketide biosynthesi

89

73

BTH_I2687-

Transposase; unknown

12.6

57.4

BPSL2036-

Unknown function

6.5

55.4

BPSS1011

biosynthesis; lipid transport and metabolism genes

  

BTH_II1682

s proteins+

  

BTH_I2692

proteins

  

BPSL2040

genes

  

BPSS2210-

Miscellaneous clusters,

60

71.8

BTH_II0143-

Flagella system,

58

65

BTH_II1612-

Miscellaneous clusters,

12.4

66

BPSS0779-

Miscellaneous clusters,

11.2

70.9

BPSS2263

including lipopolysaccharides biosynthesis genes; signal transduction mechanisms genes; etc.

  

BTH_II0197

chemotaxis-assoicated proteins+

  

BTH_II1622

including Energy production and conversion genes; transcriptional regulators etc.

  

BPSS0784

including Secondary metabolites biosynthesis; energy production and conversion genes

  

BPSS1632

Probable non-ribosomal

53

67.1

BTH_II0913-

Miscellaneous clusters

45.2

69

BTH_II0079-

Transposase

9.8

69.1

BPSS0068-

Transposase; regulator

8.1

65.1

BPSS1640

peptide synthetase (NRPS) cluster

  

BTH_II0943

   

BTH_II0083

   

BPSS0074

protein

  

BPSS1375-

Type III systems 1

47

64.3

BTH_II0054-

RND multi-drug efflux

28.4

65

BTH_I1328-

GDP-D-rhamnose

9.7

66.2

BPSL2793-

Capsule biosynthesis

13.9

57.1

BPSS1412

(TTS1)*

  

BTH_II0072

proteins

  

BTH_I1335

biosynthesis+

  

BPSL2806

proteins*

  

BPSL2848-

Phosphonate utilization

12

70.9

BTH_II1626-

L-arabinose assimilation

10.4

71

BTH_II0431-

Transposase

6.8

62.4

BPSS1940-

Signal transduction;

4.4

69.4

BPSL2860

operon+

  

BTH_II1633

operon *

  

BTH_II0436

   

BPSS1941

chemotaxis

  
  1. * genes associated with this functional difference have been reported.
  2. + genes associated with this functional difference are firstly reported
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BMC Microbiology

ISSN: 1471-2180

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